LOCUS       AK119561                1760 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-113-B09, full insert
            sequence.
ACCESSION   AK119561
VERSION     AK119561.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1760
                     /clone="002-113-B09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1760
                     /db_xref="Osa1:LOC_Os08g36910"
                     /note="(Rice Genome Annotation Project) alpha-amylase
                     isozyme 3D precursor, putative, expressed"
                     /note="mapping to R08-TIGRv4S1-000736F (Chr.8: short
                     arm=23208514, long arm=23210398, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          376 a          515 c          534 g          335 t
ORIGIN      
        1 acgaacacat cgatcatcca tcatctacaa gagatcgatc agtagtggtt agcagcaact
       61 cactatcgaa cacggtttca gcttacacag atatgaagaa caccagcagc ttgtgtttgc
      121 tgctcctcgt ggtgctctgc agcttgacct gtaactcggg tcaagcacag gtcctcttcc
      181 agggtttcaa ctgggagtcg tggaagcagc agggtggctg gtacaacatg ttgaaaggcc
      241 aagtcgacga catcgccaag gccggggtca cccacgtctg gctgccgccg ccgtcgcact
      301 ccgtggcgcc gcaggggtac atgccggggc gtctctacga cctggacgcg tccaagtacg
      361 gcacggcggc ggagctcaag tcgctgatcg cggcgttcca cgggaagggc gtccagtgcg
      421 tcgccgacgt cgtgatcaac caccggtgcg ccgagaagaa ggacgcccgc ggcgtgtact
      481 gcgtgttcga gggcgggacg cccgacgacc gcctcgactg gggccccggc atgatctgca
      541 gcgacgacac gcagtactcc gacggcacgg gccaccgcga caccggcgag gggttcggcg
      601 cggcgcccga catcgaccac ctcaacccgc gcgtccagcg ggagctcacc gactggctca
      661 actggctcaa gtccgacgtc ggcttcgacg gctggcgcct cgacttcgcc aagggatact
      721 ccacggacat cgctaagatg tacgtcgaga gctgcaagcc gggcttcgtc gtcgccgaga
      781 tatggaactc gctgagctac aacggcgacg gcaagccggc ggccaaccag gaccagggcc
      841 gtcaggagct ggtgaactgg gtgaacgccg tcggcgggcc ggcgatgacg ttcgacttca
      901 ccaccaaggg cctcctgcag gcgggcgtcc agggcgagct gtggcggctg cgcgacggca
      961 acggcaaggc cgccggcatg atcgggtggc tgccagagaa ggccgtcacg ttcgtcgaca
     1021 accacgacac cggctcgacg cagaagcttt ggccgttccc ctccgacaag gtcatgcagg
     1081 gctacgccta catcctcacc caccccggag tcccctgcat cgtaagcaaa ccatgcatta
     1141 tagtattata taccatgtcc tgattaacct ccaccgtaca cgtgtcctga tgaacgcttc
     1201 ttgtggcagt tctacgacca catgttcgac tggaacctga agcaggagat aaccgcgctg
     1261 gcggcgatca gggagaggaa cggcatcaac gccgggagca agctccggat cgtcgtcgcc
     1321 gacgccgacg catacgtcgc cgtcgtcgac gagaaggtca tggtgaagat cgggacgagg
     1381 tacgacgtgg gcaacgaggt gccgtcggat ttccatcaga cggtgcacgg caaggactac
     1441 agcgtctggg agaaggggtc cctccgcgtc ccggcggggc ggcacctata gcgggctcaa
     1501 gccctaaact gaacgggata gtcatgctca aaccagtttc tacacggcaa gaatttactg
     1561 attcttatac ttttgcagtc aattaaatta tggtttttat atatgtaatt ttgtatccga
     1621 ttgtagcgtt cgaataagta ggcaggctct ctagcctcta ggttaattgc ggggcatatg
     1681 tagcttgcca gttaattgtg tttgtatcac gcagtttgta accgttggtg caatatataa
     1741 tgtcaggttc aggatgcagt
//