LOCUS AK119561 1760 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-113-B09, full insert sequence. ACCESSION AK119561 VERSION AK119561.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1760) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1760 /clone="002-113-B09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1760 /db_xref="Osa1:LOC_Os08g36910" /note="(Rice Genome Annotation Project) alpha-amylase isozyme 3D precursor, putative, expressed" /note="mapping to R08-TIGRv4S1-000736F (Chr.8: short arm=23208514, long arm=23210398, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 376 a 515 c 534 g 335 t ORIGIN 1 acgaacacat cgatcatcca tcatctacaa gagatcgatc agtagtggtt agcagcaact 61 cactatcgaa cacggtttca gcttacacag atatgaagaa caccagcagc ttgtgtttgc 121 tgctcctcgt ggtgctctgc agcttgacct gtaactcggg tcaagcacag gtcctcttcc 181 agggtttcaa ctgggagtcg tggaagcagc agggtggctg gtacaacatg ttgaaaggcc 241 aagtcgacga catcgccaag gccggggtca cccacgtctg gctgccgccg ccgtcgcact 301 ccgtggcgcc gcaggggtac atgccggggc gtctctacga cctggacgcg tccaagtacg 361 gcacggcggc ggagctcaag tcgctgatcg cggcgttcca cgggaagggc gtccagtgcg 421 tcgccgacgt cgtgatcaac caccggtgcg ccgagaagaa ggacgcccgc ggcgtgtact 481 gcgtgttcga gggcgggacg cccgacgacc gcctcgactg gggccccggc atgatctgca 541 gcgacgacac gcagtactcc gacggcacgg gccaccgcga caccggcgag gggttcggcg 601 cggcgcccga catcgaccac ctcaacccgc gcgtccagcg ggagctcacc gactggctca 661 actggctcaa gtccgacgtc ggcttcgacg gctggcgcct cgacttcgcc aagggatact 721 ccacggacat cgctaagatg tacgtcgaga gctgcaagcc gggcttcgtc gtcgccgaga 781 tatggaactc gctgagctac aacggcgacg gcaagccggc ggccaaccag gaccagggcc 841 gtcaggagct ggtgaactgg gtgaacgccg tcggcgggcc ggcgatgacg ttcgacttca 901 ccaccaaggg cctcctgcag gcgggcgtcc agggcgagct gtggcggctg cgcgacggca 961 acggcaaggc cgccggcatg atcgggtggc tgccagagaa ggccgtcacg ttcgtcgaca 1021 accacgacac cggctcgacg cagaagcttt ggccgttccc ctccgacaag gtcatgcagg 1081 gctacgccta catcctcacc caccccggag tcccctgcat cgtaagcaaa ccatgcatta 1141 tagtattata taccatgtcc tgattaacct ccaccgtaca cgtgtcctga tgaacgcttc 1201 ttgtggcagt tctacgacca catgttcgac tggaacctga agcaggagat aaccgcgctg 1261 gcggcgatca gggagaggaa cggcatcaac gccgggagca agctccggat cgtcgtcgcc 1321 gacgccgacg catacgtcgc cgtcgtcgac gagaaggtca tggtgaagat cgggacgagg 1381 tacgacgtgg gcaacgaggt gccgtcggat ttccatcaga cggtgcacgg caaggactac 1441 agcgtctggg agaaggggtc cctccgcgtc ccggcggggc ggcacctata gcgggctcaa 1501 gccctaaact gaacgggata gtcatgctca aaccagtttc tacacggcaa gaatttactg 1561 attcttatac ttttgcagtc aattaaatta tggtttttat atatgtaatt ttgtatccga 1621 ttgtagcgtt cgaataagta ggcaggctct ctagcctcta ggttaattgc ggggcatatg 1681 tagcttgcca gttaattgtg tttgtatcac gcagtttgta accgttggtg caatatataa 1741 tgtcaggttc aggatgcagt //