LOCUS AK119560 1995 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-113-B08, full insert
sequence.
ACCESSION AK119560
VERSION AK119560.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1995)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1995
/clone="002-113-B08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1995
/db_xref="Osa1:LOC_Os09g26880"
/db_xref="RAP-DB:Os09g0440300"
/note="(RAP Annotation release2) Similar to Aldehyde
dehydrogenase family 7 member A1 (EC 1.2.1.3) (Antiquitin
1) (Matured fruit 60 kDa protein) (MF-60)"
/note="(Rice Genome Annotation Project) aldehyde
dehydrogenase family 7 member A1, putative, expressed"
/note="mapping to R09-TIGRv4S1-000441R (Chr.9: short
arm=16329129, long arm=16337510, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 509 a 446 c 521 g 519 t
ORIGIN
1 actccaccgc ctccgtataa gtatcccttc cttaccgccg gccagccaca gccaccgcct
61 cccccacccc accccgatcc cctccccgcc gtacgggcgc agaaggaacc cgtcttctag
121 aaggaggagg agggctacct ctctctctct ctcttctgcc atggggagct tcgcgaggaa
181 ggagcaccag ttcctcgccg agcttggcct cgcgccgcgg aaccccgggt ccttcgcctg
241 cggcgcctgg ggcggctcgg gccccgtcgt cacgtccacc aacccgacga acaaccaggt
301 catcgcggag gtcgtggagg cgtccgcgcg tgagtacgag gagggcatgc gcgcctgcta
361 cgatgccgcc aagacctgga tggcgattcc agctccaaag cgaggagaaa ttgttaggca
421 aattggtgat gcattgagag caaagctcca tcacctgggc aggcttgtgt cacttgagat
481 ggggaaaatt cttcctgaag ggattggaga ggttcaggaa atcattgaca tgtgtgatta
541 tgctgtgggc ctaagtcgcc agctaaatgg gtccatcata ccatctgaac gcccgaatca
601 tatgatgatg gaggtgtgga atcctcttgg agttgttggt gttatcacag cattcaattt
661 tccttgtgct gtgctgggtt ggaatgcctg catagctttg gtatgtggaa actgtgttgt
721 ctggaaaggt gctccaacta ctccgttgat cactattgca atgactaaaa tagttgccag
781 tgtattggag aggaacaact tgccaggctc aatttttaca gcattctgtg gtggtgctga
841 cattggccaa gcaatttctc ttgacacaag gatacccttg gtttcattca caggaagcac
901 aaaggttggt ctaatggttc agcagcaagt gaatgcaaga tttggcaaat gccttcttga
961 acttagtggg aacaatgcca ttattgtaat gcatgatgca gacattcagc tagctgtccg
1021 ttcagtgttg tttgctgctg ttggaacagc aggacaacgc tgcactacat gtcgtaggct
1081 gcttcttcac gaaagcatat accgaacatt tcttgatcaa cttgttgagg tttataaaca
1141 agtccgaatt ggggatcctt tggagaatgg tacgttactg gggccattgc acactcctgc
1201 ttcaagagac gccttcttga aaggcatcca aaccatcaga tctcaggggg gaaaaattct
1261 ttatggagga tctgcaattg aatctgaggg aaactttgtt cagccaacaa ttgaggaaat
1321 ttcaccctct gcaccggttg tgagagaaga actctttggt cctgttcttt atgtgatgaa
1381 agttcagaat ctgaaggaag cagttgaaat caacaattct gttcctcaag gattgagcag
1441 ttctatattt acaaagagac cagatattat tttcaagtgg attgggcctc atggtagtga
1501 ctgtggcatt gttaatgtaa atattcccac aaatggtgct gaaattggtg gagcttttgg
1561 tggagaaaaa gctactggtg gtggacgaga agcagggagt gattcgtgga agcagtacat
1621 gaggagggcc acttgtacga tcaactatgg aagcgagctg cctctagtac aaggaataaa
1681 ttttggctag ttcggtggtc aagatcggct gatgaacatg ttaagcttca tcgacagact
1741 tcaggaattt ctactggcgt caactgaaaa ccgaaacttc aacgcagctg cattgctatg
1801 tgtgcatata atgagagatg agtccaatat taatgcatgt actgctcttg ctatgattag
1861 ccgtcggagt tcgagtccaa taaacaggga aaaattgcgt attccctgat cggttggtat
1921 gtaccaacat ttctgatgta atctttagaa cggtatcggt tgaaaacttg aaatgaacga
1981 aaacgcggta agaat
//