LOCUS AK119537 1722 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-204-B11, full insert
sequence.
ACCESSION AK119537
VERSION AK119537.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1722)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1722
/clone="001-204-B11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1722
/db_xref="Osa1:LOC_Os03g08020"
/note="(Rice Genome Annotation Project) elongation factor
1-alpha, putative, expressed"
/note="mapping to R03-TIGRv4S1-000295F (Chr.3: short
arm=4079095, long arm=4082071, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 379 a 468 c 446 g 429 t
ORIGIN
1 tcctctctcc catctcatcc cagccgccgc cgccgcagcc tcctcctctc gccatctccc
61 gtcctctcct tcaagtcagc tacctgctta atcaaccatg ggtaaggaga agacgcacat
121 caacattgtg gtcattggct acgtcgactc tggcaagtcg accaccacgg gccatctgat
181 ctacaagctt ggaggtatcg acaagcgtgt gattgagagg ttcgagaagg aagccgctga
241 gatgaacaag aggtccttca agtacgcgtg ggtgctcgac aagctcaagg ccgagcgtga
301 gagaggtatc accatcgata ttgccctgtg gaagttcgag accaccaagt actactgcac
361 ggtcatcgat gcccctggtc accgtgactt catcaagaac atgatcacgg gtacctccca
421 ggctgactgt gccgtgctca tcattgactc caccactggt ggttttgagg ctggtatctc
481 caaggatggc cagacccgtg agcacgctct tcttgctttc actcttggtg tgaagcagat
541 gatctgctgc tgcaacaaga tggatgccac cactcccaag tactccaagg cccgttacga
601 tgaaatcgtg aaggaagtct catcctacct gaagaaggtc ggctacaacc ctgacaagat
661 tcccttcgtt cccatctctg ggtttgaggg tgacaacatg attgagaggt ccaccaacct
721 tgactggtac aagggcccca ccttgcttga ggctcttgac cagatcaacg agcccaagag
781 gccatcagac aagcccctgc gtcttcccct tcaggacgtg tacaagatcg gtggtattgg
841 caccgtgcct gtgggtcgtg ttgagactgg agtcctcaag cctggtatgg tggtgacctt
901 tggtcccagc ggcctgacca ctgaggtcaa gtcggttgag atgcaccacg aggctctcca
961 ggaggctctt cctggtgaca acgtcgggtt caacgtgaag aacgttgcgg tgaaggatct
1021 gaagcgtggg tacgtggcct ccaactccaa ggatgaccct gccaaggagg ctgccagctt
1081 cacctcccag gtgatcatca tgaaccaccc tggccagatc ggcaacggct acgccccagt
1141 gctggactgc cacacctccc acattgccgt caagtttgct gagctggtga ccaagatcga
1201 cagacgatct ggtaaggagc tggagaagga gcccaagttc ctcaagaacg gtgatgctgg
1261 tatggttaag atgattccca ccaagcccat ggttgtggag accttctctg agtaccctcc
1321 tcttggtcgt tttgccgtgc gtgacatgag gcaaacggtg gctgttggcg tcatcaagaa
1381 cgtggagaag aaggacccaa ccggtgccaa ggtgaccaag gctgccgcca agaagaaatg
1441 atcctcgttc aagtggtagt tttgtgcacg gccatggcac tcgttgcatt gaccgttatt
1501 atcatatgct cgctgtgtgc actgtgtcgt ttaaaactct ctattttctg ttcggtttaa
1561 acttgttctg agcctgatta ttgcccttcg gctgttgtgg aatgcgggta tttacattgc
1621 taattcctat gtctttattt tggcttgtgg cattcgcttg ttctactgct attgaaaact
1681 gtaatctgtt tctgttatta aaaactgaac cttttcttct gc
//