LOCUS       AK119528                1818 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-203-C04, full insert
            sequence.
ACCESSION   AK119528
VERSION     AK119528.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1818)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1818
                     /clone="001-203-C04"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1818
                     /db_xref="Osa1:LOC_Os03g08050"
                     /db_xref="RAP-DB:Os03g0177400"
                     /note="(RAP Annotation release2) EF-1 alpha"
                     /note="(Rice Genome Annotation Project) elongation factor
                     1-alpha, putative, expressed"
                     /note="mapping to R03-TIGRv4S1-000296F (Chr.3: short
                     arm=4089490, long arm=4092860, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          404 a          471 c          473 g          470 t
ORIGIN      
        1 aaagtctcac cctagccgcc gccgcctcct cctcctctcg ccttctcccg tcttctcctt
       61 cgagttagct acctccttat tcaaccatgg gtaaggagaa gacgcacatc aacatcgtgg
      121 tcattggcca cgtcgactcc ggcaagtcga ccaccacggg ccatctgatt tacaagcttg
      181 gaggtatcga caagcgtgtg atcgagaggt tcgagaagga agccgctgag atgaacaaga
      241 ggtccttcaa gtacgcgtgg gtgcttgaca agctcaaggc cgagcgtgag agaggtatca
      301 ccatcgatat tgccctgtgg aagttcgaga ccaccaagta ctactgcacg gtcatcgatg
      361 cccctggtca ccgtgacttc atcaagaaca tgatcacggg tacctcccag gctgactgtg
      421 ccgtgctcat cattgactcc accactggtg gttttgaggc tggtatctcc aaggatggcc
      481 agacccgtgg gcacgctctt cttgctttca ctcttggagt gaagcagatg atctgctgct
      541 gcaacaagat ggatgccacc actcccaagt actccaaggc ctgttatgat gaaatcgtga
      601 aggaagtctc atcctacctg aagaaggtcg gctacaatcc tgacaagatt cccttcgttc
      661 ccatctctgg gtttgagggt gacaacatga ttgagaggtc caccaacctt gactggtaca
      721 agggccccac cttgcttgag gctcttgacc agatcaacga gcccaagagg ccatcagaca
      781 agcccctgcg ccttcccctt caggacgtgt acaagatcgg tggtattggc accgtgcctg
      841 tgggtcgtgt tgagactgga gtcctcaagc ctggtatggt ggtgaccttt ggtcccagtg
      901 gcctgaccac tgaggtcaag tcggttgaga tgcaccacga ggctctccag gaggctcttc
      961 ctggtgacaa cgtcgggttc aacgtgaaga acgttgcggt gaaggatctg aagcgtgggt
     1021 acgtggcctc caactccaag gatgaccctg ccaaggaggc tgccagcttc acctcccagg
     1081 tgatcatcat gaaccaccct gggcagatcg gtaacggcta tgctccagtg ctggactgcc
     1141 acacctccca cattgctgtc aagtttgctg agctggtgac caagattgac agacgatctg
     1201 gcaaggagct ggagaaggag cccaagttct tgaagaacgg tgatgctggt atggtcaaga
     1261 tgattcctac caagcccatg gttgtggaga ccttctctga gtaccctcct cttggtcgtt
     1321 ttgcggtgcg tgacatgagg caaacggtgg ctgttggcgt catcaagaac gtggagaaga
     1381 aggacccaac cggtgccaag gtgaccaagg ctgccgccaa gaagaagtga gcctcgttca
     1441 aatggtggct tgcatgtctg cagttgagat atctagttct agtatttgtt aagttttgcc
     1501 cacggccatg gctctcgttt catggaccgt taatatctgc tcgcaatgtg cactatgtca
     1561 gtcgtttaat actcgtttat ttctgttcgg ttaaaactga tgctctgagt ccgattattg
     1621 tccatcggct gttttggaat gcgagtattt acattgctac ttcctgtgtc gttattttcg
     1681 tttgtgctat tccctgcttt tgctgctatt gataactgga aactgtctct gtcattgaat
     1741 ctcagacaag ttttctgcta ttggaaactg aaagcctaat ggatttcaat tatgatgatt
     1801 gctttttctg caactgcc
//