LOCUS AK119528 1818 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-203-C04, full insert sequence. ACCESSION AK119528 VERSION AK119528.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1818) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1818 /clone="001-203-C04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1818 /db_xref="Osa1:LOC_Os03g08050" /db_xref="RAP-DB:Os03g0177400" /note="(RAP Annotation release2) EF-1 alpha" /note="(Rice Genome Annotation Project) elongation factor 1-alpha, putative, expressed" /note="mapping to R03-TIGRv4S1-000296F (Chr.3: short arm=4089490, long arm=4092860, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 404 a 471 c 473 g 470 t ORIGIN 1 aaagtctcac cctagccgcc gccgcctcct cctcctctcg ccttctcccg tcttctcctt 61 cgagttagct acctccttat tcaaccatgg gtaaggagaa gacgcacatc aacatcgtgg 121 tcattggcca cgtcgactcc ggcaagtcga ccaccacggg ccatctgatt tacaagcttg 181 gaggtatcga caagcgtgtg atcgagaggt tcgagaagga agccgctgag atgaacaaga 241 ggtccttcaa gtacgcgtgg gtgcttgaca agctcaaggc cgagcgtgag agaggtatca 301 ccatcgatat tgccctgtgg aagttcgaga ccaccaagta ctactgcacg gtcatcgatg 361 cccctggtca ccgtgacttc atcaagaaca tgatcacggg tacctcccag gctgactgtg 421 ccgtgctcat cattgactcc accactggtg gttttgaggc tggtatctcc aaggatggcc 481 agacccgtgg gcacgctctt cttgctttca ctcttggagt gaagcagatg atctgctgct 541 gcaacaagat ggatgccacc actcccaagt actccaaggc ctgttatgat gaaatcgtga 601 aggaagtctc atcctacctg aagaaggtcg gctacaatcc tgacaagatt cccttcgttc 661 ccatctctgg gtttgagggt gacaacatga ttgagaggtc caccaacctt gactggtaca 721 agggccccac cttgcttgag gctcttgacc agatcaacga gcccaagagg ccatcagaca 781 agcccctgcg ccttcccctt caggacgtgt acaagatcgg tggtattggc accgtgcctg 841 tgggtcgtgt tgagactgga gtcctcaagc ctggtatggt ggtgaccttt ggtcccagtg 901 gcctgaccac tgaggtcaag tcggttgaga tgcaccacga ggctctccag gaggctcttc 961 ctggtgacaa cgtcgggttc aacgtgaaga acgttgcggt gaaggatctg aagcgtgggt 1021 acgtggcctc caactccaag gatgaccctg ccaaggaggc tgccagcttc acctcccagg 1081 tgatcatcat gaaccaccct gggcagatcg gtaacggcta tgctccagtg ctggactgcc 1141 acacctccca cattgctgtc aagtttgctg agctggtgac caagattgac agacgatctg 1201 gcaaggagct ggagaaggag cccaagttct tgaagaacgg tgatgctggt atggtcaaga 1261 tgattcctac caagcccatg gttgtggaga ccttctctga gtaccctcct cttggtcgtt 1321 ttgcggtgcg tgacatgagg caaacggtgg ctgttggcgt catcaagaac gtggagaaga 1381 aggacccaac cggtgccaag gtgaccaagg ctgccgccaa gaagaagtga gcctcgttca 1441 aatggtggct tgcatgtctg cagttgagat atctagttct agtatttgtt aagttttgcc 1501 cacggccatg gctctcgttt catggaccgt taatatctgc tcgcaatgtg cactatgtca 1561 gtcgtttaat actcgtttat ttctgttcgg ttaaaactga tgctctgagt ccgattattg 1621 tccatcggct gttttggaat gcgagtattt acattgctac ttcctgtgtc gttattttcg 1681 tttgtgctat tccctgcttt tgctgctatt gataactgga aactgtctct gtcattgaat 1741 ctcagacaag ttttctgcta ttggaaactg aaagcctaat ggatttcaat tatgatgatt 1801 gctttttctg caactgcc //