LOCUS AK119321 3646 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-131-A02, full insert
sequence.
ACCESSION AK119321
VERSION AK119321.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3646)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3646
/clone="001-131-A02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 79..1542
/db_xref="Osa1:LOC_Os06g03940"
/db_xref="Osa1:LOC_Os06g03950"
/db_xref="RAP-DB:Os06g0130000"
/note="(RAP Annotation release2) Similar to Tobacco
mosaic virus helicase domain-binding protein (Fragment)"
/note="(Rice Genome Annotation Project) hypothetical
protein"
/note="(Rice Genome Annotation Project) spastin,
putative, expressed"
/note="mapping to R06-TIGRv4S1-000091F (Chr.6: short
arm=1587505, long arm=1601311, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99616.1"
/translation="MSFLRALADSLSSLLYSAAAKGGDMDGAAAAPSPAAVVGERVAV
KLRGYFELAKEEIDKAVRAEEWGLPDDAAAHYRNALRVMLEAKAARVPDAVSSSERGQ
VRVYQEKIAKWQTQVEERLRVLGQRSGAAAPVPKKVVTNNPVNRNDRAASTSFHRPTS
QPSPTFNRGGQASSHQKSSSGGAKPVQRAGANYDDKLVEMINTTIVDRSPAVKWEDVA
GLDKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATF
FNVSASSLTSKWVGEAEKLVRTLFMVAVDRQPSVIFMDEIDSVMSARLANENDASRRL
KSEFLIQFDGVTSNPDDLVIVIGATNKPQELDDAVLRRLVKRIYVPLPDPNVRRLLLK
TQLKGQSFKLSSHDLERLAADTEGYSGSDLRALCEEAAMMPIRELGPQNILTIKANQL
RPLKYEDFKKAMTVIRPSLQKSKWDELEKWNEEFGSS"
BASE COUNT 944 a 831 c 982 g 889 t
ORIGIN
1 cttcctcctc ctccccacca actcgatcgc gcgtcgcgga atccggatgc tcccggcggc
61 gctgctcgcc gtcggcgcat gagcttcctc cgcgcgctcg cggactccct gtcgtcgctg
121 ctgtactcgg cggctgcgaa ggggggagac atggacgggg ccgcggcggc gccgtcgccg
181 gcggcggtgg tgggggagcg cgtggcggtg aagctcaggg gatacttcga gctggccaag
241 gaggagatcg acaaggccgt gcgcgccgag gagtgggggc tccccgacga cgccgccgcg
301 cactaccgca acgcgctccg cgtcatgctc gaggccaagg ccgcccgcgt cccggacgcc
361 gtatcctcca gcgagagggg gcaggttagg gtctaccagg agaagatcgc aaagtggcag
421 actcaggtgg aggaacgact ccgggtgctc ggccagagga gtggagcggc tgcaccagtg
481 ccaaagaagg ttgttacaaa caatcctgtt aataggaatg acagagccgc atcaactagc
541 ttccataggc ctacttcgca gcctagccct acctttaata gaggtggtca agcatcttct
601 catcagaaga gtagcagtgg aggtgccaaa cctgtgcaaa gagctggtgc aaactatgat
661 gataagcttg ttgaaatgat aaatacgacc attgtggata gaagtcctgc tgttaaatgg
721 gaagatgttg ctggccttga caaggcaaag caagcactca tggaaatggt cattttacct
781 accaagcgaa gggatttgtt tactggtctt cggaggcctg ctagagggct tcttctcttt
841 ggtcccccgg ggaatggaaa gacgatgctt gccaaagctg ttgcatcaga atctgaagca
901 acatttttta atgtttcagc ttcttcactg acatcaaagt gggtaggaga ggctgaaaag
961 cttgtacgga cactcttcat ggtcgctgtc gatagacaac catctgtaat ttttatggat
1021 gagattgata gtgtcatgtc agcaaggtta gctaatgaga atgatgctag caggcggttg
1081 aaatctgaat ttcttatcca gtttgatggg gtcacttcaa accctgatga tcttgttatt
1141 gttataggtg ctaccaataa gccacaagag ctggatgatg ctgttctccg tagactggta
1201 aagagaatat atgtgccatt acctgatcca aatgtccgaa gattactgct gaaaactcag
1261 ctcaaaggac aatcattcaa attatccagt catgatcttg aaaggcttgc tgcagatact
1321 gaaggatatt ccgggagtga tctgagagca ttgtgtgagg aagctgccat gatgccaatc
1381 agagagcttg gtccacaaaa tattctcact ataaaagcaa atcagttgcg gcccctgaaa
1441 tacgaagatt tcaagaaagc catgactgtg attaggccaa gcctgcagaa gagcaagtgg
1501 gacgagctag agaaatggaa cgaagaattt ggttcaagtt gacactagac aatggcctat
1561 ctgaaagcct gaaaagatca aattcttgag atgccatcac aactgaaact gaacacacga
1621 gcgaaccatc agttgatgcc cagaatccag ataagccatc tcatgattgg agaagaatga
1681 ttggtggtgg ccaattggtg aggcgacgag gagctaatca tgtcccggac gaagccagcg
1741 tcgcgatcgc catggcagca gcagcaggtg gacgtttact catccgcatg gcccatttag
1801 cgcccccatt tgcgattttt cgcagcatca cggagaaaag aaaagaaaag aaaaggcgcg
1861 gatggacgca atgcatgtgc cgtcgcacag agctggatct cgcagcagca gcaccacacc
1921 acctatgatg acatgtgagc tgggacgaag ttcacatgct ggcgaggggc ccacctgtca
1981 gtgagtgatt gcaaaccgcc gatatccgat gacacgcggc gagagtttac tgaactcgac
2041 caattacatc aagatgatac aaccgtcctg agaatgcttc tgatccctgt atagataaga
2101 aattggagaa tttaggctgc agtggcagct gcgagctact cgtgacgggt ttgataagta
2161 gatttggttg tcgggtcggc tggtgtcggt gatggcgatg gaggcagagg agggagcagt
2221 gatttttaag ttgggcggcc gagttagtta ggaggagtga tgtccatcca cagtgtcgcc
2281 aaagacttgt tcttcatggc catgtgacaa ggaaggaagg aagcagatca ggctgggatc
2341 atcaatgcaa tcctggctta ggattcttgt tttggtgagc tgaccaccac ttgaccagag
2401 taattaagcc aattaagatg gttattacta ctactacaat cacattctct ggtctctctc
2461 cacagatagt gatctgatct gatctgatca gatgcaaagt tgttgctgta actgaaaagc
2521 catatctttt cctctcagct ctacagcagc tatcttctgt gcaagatatt cagagaggga
2581 atatgtgtca ctgtgtggct ttggcctgca aacgcctact aatcctgggg aattgcagtg
2641 gcaatggtga atggttctga taatcctgtt ttgtgctgag gtgtggggcc tgtggtgagg
2701 gcccagttgt ctgtgctcca ctggtgggtg ggccaggtta cttggatcag aatgttcctc
2761 ttctcctaca taccctggct ggtgatgatg tggatctcag gttcagcagt ttcagcacca
2821 attgcaggtt tatggtatca tcttgacgcc atatcccaat gcccgaattt caagggattc
2881 agaacattgc aggggagcct gaaaccttcc aaggaattgc catgagaccc agagaagatg
2941 gtaaaaattt ctctctactg ttgcagcaag ctggtcccct accacatgcc tctctcctgt
3001 tgctgcagct cttcacattg ccaaaaaccg gtgccatgta atcgtaccca gttcagttca
3061 gatccactca gagcaatcag caatgcaaat gggctggctg atctgatcat ctccatggtg
3121 ttcttggcag caagaaaacg agaaccaaac caagaacaac atggcagcag caatggtgtt
3181 ccatggatgg cattgcaaat cgatctccac aatggcagca gcaacctttt gactagtcca
3241 gaataaggca cgcagctctt gtcctcccat gtctcctggc tggatgatgc tattgctgcc
3301 gctgctgcaa ttgcttattt acccactggt catggcatgc atgtattttt atgtatgtgg
3361 tgtgtcccca tgctctgttt gttactacac aacagttata aaggtgcagc tcctttgcat
3421 acttctggca aaaaactttc acccaaagca aaagaaagag attcatcagc aatgtcatgg
3481 attcattgaa ggcaaagatt tgatgcatcc tgttggcaat tgctaaacac aacttagaga
3541 gagagagaga gaatgagaaa gatagagtct ttggaatgtt catatttgtt tggttgtggt
3601 gtgtcatgtg catgaatgaa tctgctgcct gctgtatggc tagctg
//