LOCUS AK119274 3554 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-130-B06, full insert
sequence.
ACCESSION AK119274
VERSION AK119274.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3554)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3554
/clone="001-130-B06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3554
/db_xref="Osa1:LOC_Os09g19680"
/db_xref="RAP-DB:Os09g0360900"
/note="(RAP Annotation release2) Conserved hypothetical
protein"
/note="(Rice Genome Annotation Project) ABC-type
transport protein, putative, expressed"
/note="mapping to R09-TIGRv4S1-000252F (Chr.9: short
arm=11778733, long arm=11784475, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 888 a 758 c 886 g 1022 t
ORIGIN
1 aatcggttta actcaaaatc ccaactccga acgcctcttc ttctcctcac cgccgccgaa
61 gcgtagcggc tactccccat ctgcctccgc ctccgcctct cccatggatg atgacgattc
121 cgcgaggagg agggggagga gccccgccag cttctccacc caggcctccg ccctcctccg
181 caagaacctc tgcttccagg aaagccgcac cgattgatcc cttctctgtg tctgccttgc
241 tgcccgcgac gtgtttgtgg atatgcctgc ccggttctta tggtttaatc atgctgctct
301 ggtttggggc ttttggatgg atgatgggca gccatcgatt tcatctgtgt tcttgggggg
361 gtgggaggca tatggttgat ggtttttggt ggtggcatct gattcttgtc tctttggctg
421 cgggtgcaga ggcggaacct gaagacgaac gtcggcatca ccgtcttccc gatcctcatc
481 tgcgtgctgc tcgtcgtgct tcagaacgtg atcaacgggg agctcgacaa gcccaagtac
541 cagtgcggct gcgaatgcac cgagagtgac ctggatggga cctgcctgcg gaaggagtgc
601 ggcatccagc actcgacgct ggagcaggta tggagctgcg aggtgcccag cccaccacgg
661 tggccggccc tgattcaggt cccctggcca gggttccggg ctgtcgggac cgcatcgcag
721 ccgttcgacg atttgcctaa cccattgtgc cgtggcgacg ggtcttgccc tgtcactctc
781 ctcgtcactg gagagaacca aacattagct gagcgtgttt caggtcgggt gtttcctgcc
841 ctttatccgt tgcctaatgt gacagactac ctgatgcctc ctcccttttc tccctctcat
901 gtgacagact atcttgatat cctctccagg atagttgttg gttcagacac acagccatgg
961 tatacccaat tgctagagcc cgctttttcc tctggtaaaa ctttgcatct tctccagcct
1021 cgttgcatgc ccttcatgtt tgggaccatt ccatacaatg cagggggcgt acccttacat
1081 atcgatatac agtgtattga agttcagatg ttgtggcgtg aaagtgcatc agttatcaac
1141 tatgaactgt ttaagggtta cgtacaaaga ggaggagaaa caaatgagtt tgttgcaggt
1201 tatgacttct tgaacacgac aggatatgac cgcaatataa atgtttggta caactctact
1261 tataatgata acactgcata ttcatttatc gcagcattac gagttccacg attggtgaat
1321 gcaatatcca atgcatacct aaaatttatc agaggaagtg gggtggatat gctgcttgaa
1381 tatgtaaaag agatgcccaa agttggaaca aggtttaggc ttgatctctc ttctcttctc
1441 agtgtgctat tcttcacatg gatagttgaa ctacttttcc cagttatgtt gacatatctg
1501 gtgtatgaga aggaacaaaa gctaaaaatt atgatgaaga tgcatggtct gaaggatggg
1561 ccttactggc taatttctta tgcttatttc tttgctctat cggttatcta tatgacattt
1621 tttgtgattt ttggctcctt aattggtaat tttcttccaa tctattttca cgaagattgc
1681 acttgcattt tgtggcatct ttcttttcat ctgtcaagac agccactgtg attggataca
1741 tttatgtatt tggctctggc ttgctagggg catttctttt tcgtttcttt gttgaggaca
1801 ggacctttcc caatggttgg ttgttagtaa tggagattgt cccaggattt tccctctatc
1861 gaggactata tgaacttggc caatatgctt tctctggaag tgctatggga gcctctggca
1921 tgacatgggg aaatttgaga gacccaatca atggaatgtg tggtatattt atcatcatga
1981 cagtagaatg ggcatttctc cttatgttag cattctattt ggatcaagtc tctccagtag
2041 gtggtggtgt caggaaaagg cccttattct tcttcaggtg tttacagaag aagcacacac
2101 cgtcattgca gaagcctagc tttgtgcaac agggttctaa agtaattgtc gatatggaga
2161 agccagatgt tgctcaagaa agagaagtag ttgagcaact tttggtaggc cgcaatgcaa
2221 atcaagctat tatatgtcac aacctcaaga agatctatcc tggaagggat ggaaaccctg
2281 ataagctggc ggttcgagga ttatctcttg ccgtaccaaa agggcagtgc tttggaatgc
2341 ttggcccaaa tggagctggg aaaacatcct tcattagtat gatgattggg cttgttaaac
2401 ctacatctgg tacttcctat gttcatggaa tggatatcaa tatggatatg gatcacatat
2461 atacaaacat gggggtgtgc ccacagcatg acttactttg ggaaccattg actggaaaag
2521 aacatctgtt cttttatggc aggctgaaga atcttaaagg tgctgtgttg gtgaaggctg
2581 ttgaggatgc tctgaagagc gtaaatctgt tccatggtgg tgttggtgat aagcaagtgg
2641 gaaagtacag cggaggcatg aaaggaaggc tcagtgtggc aatatcattg attggagacc
2701 ccaaagtcgt tttcatggat gaaccaagca ctgggctaga ccccgcatca agaaataact
2761 tgtggaatgt tgtgaaggag gccaagcgaa accgtgcgat cgttcttact acgcactcga
2821 tggaggaggc tgaagtactt tgtgatcgac ttggcatctt tgtcgatggc gatttccaat
2881 gtcttggaaa tcctaaggag ctaaaggcga gatatggggg agcatacata ttcacaatga
2941 caacatctcc agaccaagaa caagaggttg aacggctagt tcatgacttg tctccgagcg
3001 caaataagat ctaccaccta tctggaactc aaaagttcga gctgccaaag caagaggtga
3061 aaatagccga ggtatttcgc gcagttgagg atgcgaagaa acggttcacc gtgcatgcct
3121 ggggcctggt tgataccacc ttggaggatg tcttcataaa gcatatatga ttctttaaag
3181 ttcgagctgc caaagcaaga ggtgaaaata gccgaggtat ttcgcgcagt tgaggatgcg
3241 aagaaacggt tcaccgtgca tgcctggggc ctggttgata ccaccttgga ggatgtcttc
3301 ataaaggttg ccaagggagc aaaggcatcc agtgataata gttagtttgt gcattgataa
3361 tattgtgaga tttataggcc gactaatatt cttttatgtc ttgactttag catatatgat
3421 tcttttgtgg ttgtacagaa acatattatt ctcatacatc agaaaaaaaa gtaaccatat
3481 gtaacatttt tgtttatttt aaatgtacaa atgactcaat atatcattgc agatatgcgg
3541 gaattacaaa atat
//