LOCUS AK119255 2311 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-123-H02, full insert
sequence.
ACCESSION AK119255
VERSION AK119255.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2311)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Collection, mapping, and annotation of 28K full-length cDNA clones
from japonica rice
JOURNAL Unpublished (2003)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2311
/clone="001-123-H02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2311
/db_xref="Osa1:LOC_Os11g47760"
/note="(Rice Genome Annotation Project) heat shock
cognate 70 kDa protein 2, putative, expressed"
/note="mapping to R11-TIGRv4S1-000870F (Chr.11: short
arm=28246252, long arm=28250374, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 561 a 595 c 649 g 506 t
ORIGIN
1 cgagtcgggt tgtttgggaa tgcagcccaa atcgggcggt aaactccgtc caaggctaaa
61 tacaggcgag agaccgatag cgaacaagta ccgcgaggga aagatctctc ccactcttcc
121 tcctccccaa accctagccg ccgccgccgg cgtactcgag agaaacatca gcatccatgg
181 cgggcaaggg cgagggtccg gccatcggca tcgaccttgg cacgacctac tcgtgcgtgg
241 gcgtttggca gcacgaccgc gtggagatca tcgccaacga ccagggcaac cgcaccaccc
301 cctcctacgt cggcttcacc gactccgaga ggctcatcgg agatgctgcc aagaaccagg
361 tcgccatgaa ccccatcaac accgtctttg atgccaagcg tctcattggc aggaggttta
421 gcgatgcttc tgttcagagt gacattaagc tctggccctt caaggtgatt gctggacctg
481 gtgacaagcc tatgattgtt gtccagtaca agggtgagga gaagcagttt gctgcagaag
541 agatctcctc catggtcctc atcaagatgc gtgagattgc tgaggcctac cttggcacca
601 ccatcaagaa tgccgttgtc actgttcctg cctacttcaa tgactcccag aggcaggcca
661 ccaaggatgc tggagtgatt gctggtctca atgtcatgcg tatcatcaac gagccgactg
721 ctgcagctat tgcctatggt cttgataaga aggccaccag cgttggtgag aagaatgtcc
781 tcatctttga ccttggaggt ggtacctttg atgtctccct ccttaccatt gaggagggta
841 tctttgaggt caaggccaca gctggtgaca cccatcttgg tggtgaagat tttgacaatc
901 gtatggtcaa ccactttgtg caagaattca agaggaagaa caagaaggat atcactggca
961 accccagggc tctcaggagg ttgaggacag cttgtgagag ggcaaagagg accctgtcct
1021 ccactgccca gaccaccatt gagatcgatt ccctgtatga gggcatcgac ttctactcaa
1081 ccatcacccg tgccaggttt gaggagctca acatggatct cttcaggaag tgtatggagc
1141 ctgtggagaa gtgcctcagg gatgctaaga tggacaagag ctctgttcat gatgttgtcc
1201 ttgttggtgg ctccactagg atcccgaggg tgcagcagct cctgcaggat ttcttcaacg
1261 gcaaggagct ttgcaagaac atcaacccag atgaggctgt tgcttatggt gctgctgtcc
1321 aggctgccat cttgagtggt gagggcaacg agaaggtcca ggacctcctc ctgttggatg
1381 ttacccctct ctctcggttt ggagactgct ggtggtgtca tgaccgtttt gatcccaagg
1441 aacaccacca ttcccaccaa gaaggagcag gtcttctcca cctactccga caaccagcct
1501 ggtgtgctca tccaggttta tgagggtgag aggaccagga cacgtgacaa caacctgctg
1561 gggaagtttg agctctctgg aatccctcct gctcccaggg gtgttccaca gatcactgtt
1621 tgcttcgaca ttgatgccaa tggtatcctg aacgtgtctg ctgaggacaa gaccaccggg
1681 cagaagaaca agatcaccat taccaacgac aagggcaggc ttagcaagga ggagattgag
1741 aagatggtcc aggaggccga gaagtacaag tcagaggatg aggagcacaa gaagaaggtg
1801 gagtccaaga acgcgctgga gaactacgcc tacaacatgc gcaacaccat caaggatgag
1861 aagatcgcct cgaagctccc ggcagcggac aagaagaaga tcgaggatgc catcgaccag
1921 gccatccagt ggctggacgg caaccagctc gctgaggctg atgagttcga tgacaagatg
1981 aaggagctgg agggcatctg caaccccatc atcgccaaga tgtaccaggg cgctggcgcg
2041 gacatggccg gcggcatgga cgaggacgat gctcccccgg ctggcggcag cggtgctggc
2101 cccaagatcg aggaggtcga ctaagcgcga aatttgctag tgatccgcgc ttcaagttat
2161 cttattgcat tattagtgtc tcttttatgt tgtgttaaaa aactttgctg ctatgactta
2221 tgatgatacc cttggtctgt ttgggcagtc cttttgaatt gaagaactgc gttgggagct
2281 ctatgagaac tatgaattgc gtgagaaatt t
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