LOCUS AK119168 1501 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-036-F11, full insert sequence. ACCESSION AK119168 VERSION AK119168.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1501) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Collection, mapping, and annotation of 28K full-length cDNA clones from japonica rice JOURNAL Unpublished (2003) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1501 /clone="001-036-F11" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 48..1277 /db_xref="Osa1:LOC_Os01g60660" /db_xref="RAP-DB:Os01g0821800" /note="(RAP Annotation release2) Endothelial monocyte-activating polypeptide II precursor pro-EMAP II family protein" /note="(Rice Genome Annotation Project) methionyl-tRNA synthetase, putative, expressed" /note="mapping to R01-TIGRv4S1-001557R (Chr.1: short arm=35396132, long arm=35401336, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG99559.1" /translation="MAAAAADFAASKRAMAYALCKHLSLDPNTISSTSIEESDIATLF SHIVKSSEDEVLKWVEFSSNFVGKCGEQHALLGNLNQDLSQKSVLLGNGFKPSVADIV VFATIQVFVSHLGENELQKYPHVLRWMDYIQNIVDFGTTVQKVNLTKSVFDPPSHPKK ADKGDTDPSSKKVVSGQKNVGKSDANVDSKKAAPENKAPENKANPTPAKNNKPSGDKK KAQEKSAGKPNEGVADKAPQKTAEKDSECNVSILNIQVGLIRKAWKHPSADSLLVEEI DLGDGNVHQVVSGLAKFFSPEELVNRHVVLITNVKPGKLRDVMSAGLVLCASNQDHTV VEPLIPPEGAKPGERISFAGFDGKPEDVLNPKKKQLDKITPDLHTDGNGIATYRGVPF TTSAGPCRSSVPNASIK" BASE COUNT 448 a 311 c 350 g 392 t ORIGIN 1 tcccccatct cacccccaag ctcggcgcaa cctctctcga cgtgctaatg gcggcggcgg 61 cggcggactt cgcggcgagc aagcgggcca tggcctacgc gctctgcaag cacctcagcc 121 tcgatccgaa tacaatatcc agtacaagta ttgaagagag tgatattgcc accctgttct 181 cacatattgt gaaatcgagt gaagatgagg tactgaaatg ggttgaattt tccagcaatt 241 ttgttggaaa atgtggagaa cagcatgcat tgcttggtaa tctgaatcaa gacttgtccc 301 agaaatcagt tctgttgggt aatggtttta aaccatcagt tgctgatatt gttgtgtttg 361 caaccataca agtttttgtg agtcatcttg gtgaaaacga gttgcagaaa tatccacatg 421 tattgcggtg gatggactat atccagaaca tcgttgattt tggcacaaca gtacaaaagg 481 ttaacttgac caaatctgtc ttcgatccac cttctcatcc aaagaaggca gataaaggtg 541 acactgatcc aagttcaaag aaagttgttt caggacagaa gaatgtgggc aaatcggatg 601 caaatgttga ttccaagaaa gctgcaccag agaataaagc tcctgagaat aaggcaaatc 661 ctactccagc aaaaaataac aaaccttctg gggataaaaa gaaagcccag gagaaatctg 721 caggaaaacc aaatgaggga gttgcggata aagctccaca gaaaactgca gaaaaggact 781 cagaatgcaa tgtcagtatc ctgaatatac aggttggcct tattcgcaaa gcatggaagc 841 acccatctgc tgacagcctc ttggttgagg agatagattt gggagatggc aatgtgcatc 901 aagttgttag tgggcttgcc aagttcttca gcccagagga acttgttaat cggcatgttg 961 tattaatcac gaatgtgaag cctgggaagc tgcgagacgt aatgtctgcc ggattggtct 1021 tgtgtgcttc aaatcaagat catacagttg tagagccatt gattcctcca gaaggagcta 1081 agcctggaga gcgtatttca tttgcagggt ttgatgggaa gccagaagat gttcttaatc 1141 cgaagaagaa acagctcgac aagatcacac cggatcttca cactgatgga aatggaattg 1201 caacataccg aggggtaccc ttcactacat ctgctggtcc atgtagatct tctgttccta 1261 atgcgagcat taagtgagca gttattttaa cagattccaa acattgttgt gctataacac 1321 atgctaggtg gatgtactat ttcatcttgc atcttattac atgccctatc aactgttgtc 1381 agcgtagcgt ccatctactg tgatatctaa tagaaaattt tgactagcca atgtgaagaa 1441 catttgtatt accttgcacc aaatgcaaaa tccttcatga acacggttgt tttcaggcag 1501 g //