LOCUS       AK119168                1501 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-036-F11, full insert
            sequence.
ACCESSION   AK119168
VERSION     AK119168.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1501)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (31-JAN-2003) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
            from japonica rice
  JOURNAL   Unpublished (2003)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1501
                     /clone="001-036-F11"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             48..1277
                     /db_xref="Osa1:LOC_Os01g60660"
                     /db_xref="RAP-DB:Os01g0821800"
                     /note="(RAP Annotation release2) Endothelial
                     monocyte-activating polypeptide II precursor pro-EMAP II
                     family protein"
                     /note="(Rice Genome Annotation Project) methionyl-tRNA
                     synthetase, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-001557R (Chr.1: short
                     arm=35396132, long arm=35401336, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG99559.1"
                     /translation="MAAAAADFAASKRAMAYALCKHLSLDPNTISSTSIEESDIATLF
                     SHIVKSSEDEVLKWVEFSSNFVGKCGEQHALLGNLNQDLSQKSVLLGNGFKPSVADIV
                     VFATIQVFVSHLGENELQKYPHVLRWMDYIQNIVDFGTTVQKVNLTKSVFDPPSHPKK
                     ADKGDTDPSSKKVVSGQKNVGKSDANVDSKKAAPENKAPENKANPTPAKNNKPSGDKK
                     KAQEKSAGKPNEGVADKAPQKTAEKDSECNVSILNIQVGLIRKAWKHPSADSLLVEEI
                     DLGDGNVHQVVSGLAKFFSPEELVNRHVVLITNVKPGKLRDVMSAGLVLCASNQDHTV
                     VEPLIPPEGAKPGERISFAGFDGKPEDVLNPKKKQLDKITPDLHTDGNGIATYRGVPF
                     TTSAGPCRSSVPNASIK"
BASE COUNT          448 a          311 c          350 g          392 t
ORIGIN      
        1 tcccccatct cacccccaag ctcggcgcaa cctctctcga cgtgctaatg gcggcggcgg
       61 cggcggactt cgcggcgagc aagcgggcca tggcctacgc gctctgcaag cacctcagcc
      121 tcgatccgaa tacaatatcc agtacaagta ttgaagagag tgatattgcc accctgttct
      181 cacatattgt gaaatcgagt gaagatgagg tactgaaatg ggttgaattt tccagcaatt
      241 ttgttggaaa atgtggagaa cagcatgcat tgcttggtaa tctgaatcaa gacttgtccc
      301 agaaatcagt tctgttgggt aatggtttta aaccatcagt tgctgatatt gttgtgtttg
      361 caaccataca agtttttgtg agtcatcttg gtgaaaacga gttgcagaaa tatccacatg
      421 tattgcggtg gatggactat atccagaaca tcgttgattt tggcacaaca gtacaaaagg
      481 ttaacttgac caaatctgtc ttcgatccac cttctcatcc aaagaaggca gataaaggtg
      541 acactgatcc aagttcaaag aaagttgttt caggacagaa gaatgtgggc aaatcggatg
      601 caaatgttga ttccaagaaa gctgcaccag agaataaagc tcctgagaat aaggcaaatc
      661 ctactccagc aaaaaataac aaaccttctg gggataaaaa gaaagcccag gagaaatctg
      721 caggaaaacc aaatgaggga gttgcggata aagctccaca gaaaactgca gaaaaggact
      781 cagaatgcaa tgtcagtatc ctgaatatac aggttggcct tattcgcaaa gcatggaagc
      841 acccatctgc tgacagcctc ttggttgagg agatagattt gggagatggc aatgtgcatc
      901 aagttgttag tgggcttgcc aagttcttca gcccagagga acttgttaat cggcatgttg
      961 tattaatcac gaatgtgaag cctgggaagc tgcgagacgt aatgtctgcc ggattggtct
     1021 tgtgtgcttc aaatcaagat catacagttg tagagccatt gattcctcca gaaggagcta
     1081 agcctggaga gcgtatttca tttgcagggt ttgatgggaa gccagaagat gttcttaatc
     1141 cgaagaagaa acagctcgac aagatcacac cggatcttca cactgatgga aatggaattg
     1201 caacataccg aggggtaccc ttcactacat ctgctggtcc atgtagatct tctgttccta
     1261 atgcgagcat taagtgagca gttattttaa cagattccaa acattgttgt gctataacac
     1321 atgctaggtg gatgtactat ttcatcttgc atcttattac atgccctatc aactgttgtc
     1381 agcgtagcgt ccatctactg tgatatctaa tagaaaattt tgactagcca atgtgaagaa
     1441 catttgtatt accttgcacc aaatgcaaaa tccttcatga acacggttgt tttcaggcag
     1501 g
//