LOCUS AK112099 3089 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert
sequence.
ACCESSION AK112099
VERSION AK112099.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3089)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3089
/clone="002-108-E06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3089
/db_xref="Osa1:LOC_Os04g48070"
/db_xref="RAP-DB:Os04g0569100"
/note="(RAP Annotation release2) Similar to OCL1 homeobox
protein"
/note="(Rice Genome Annotation Project) homeobox protein
OCL1, putative, expressed"
/note="mapping to R04-TIGRv4S1-000921R (Chr.4: short
arm=28381592, long arm=28387932, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 641 a 785 c 952 g 711 t
ORIGIN
1 agcacgcact gctgctgctg ctcgctctcg ctttgcttcc cctaatcttc tcccgggcca
61 ggggggaaga ggggcggaat tcgggcacga gctttggagt tggagatcac ttcggcgacg
121 gcgtggtccc cgccggcatg cagttcccgt tctccggcgc tggcccgggc gtcttcacgt
181 catcgccggc gctctccctc gcgctggcgg acgcggtggc aggccggaac agcggcggcg
241 gtgggaagat ggttaccgcg gcccatggcg gcgtcggcgg aggaggagga ggaggacgcg
301 cgaaggcgag ggacgcgttg gaggtggaga acgagatgag ccggtccggg agcgaccacc
361 tcgacgtcgt ctcttgcggc gacgcgggcg gcggcggcgg cgacgacgac gatgacgagg
421 acgccgagca cggcaacccg cccaagcgca agaagcggta ccaccgccac acgccgcagc
481 agatccaaga gctggaagcg atgttcaagg aatgccccca cccagacgag aagcagcgcg
541 ccgagctgag caagcggctc ggcctcgaac cccggcaggt caagttctgg ttccagaatc
601 ggcgaacgca gatgaagatg caactggagc gacacgagaa ctcgctgctg aagcaggaga
661 acgataagct gcggtccgag aacctgtcaa tccgggaggc cacgagcaac gcggtgtgcg
721 ttggctgcgg cggcccggcg atgctcgggg aggtgtccct ggaggagcac caccttcgcg
781 tcgagaacgc gaggcccaag gacgagctca gccgagtgtg cgcgctcgcc gccaagttcc
841 ttggcaagtc catctctgtc atggcgccac cgcagatgca tcagcctcat cctgtgccag
901 gctcgtcgct ggagcttgcg gttgggggta tcggttcgat gccatcagcc acgatgccca
961 tctcgacgat cactgatttt gctggcgcca tgtccagttc aatgggcacg gtgatcacgc
1021 ccatgaagtc tgaggctgaa ccatcggcaa tggctggcat tgacaagtcc ttgttcttgg
1081 agctagcaat gagtgcaatg gatgagctag tcaagatggc tcagatgggg gatccgcttt
1141 ggattccagg tgcctccgta ccttcctcgc cggcaaagga gagtctaaac ttcgaggagt
1201 acctaaacac cttcccacct tgcatcgggg tgaagcctga agggtatgta tcagaggcat
1261 ctagagaatc tggcattgtc atcattgacg atggcgccgc gcttgtggag accctcatgg
1321 atgagcgacg gtggtccgat atgttctcat gcatgattgc caaggcatca accactgagg
1381 agatttctac tggtgttgct gggagtagaa atggtgcatt gcttcttatg caggcagagc
1441 tacaggtgct ttctcctctt gtgcctatta gagaggtgaa gtttctcagg ttctccagac
1501 agctggctga tggtgtatgg gctgtagtgg acgtttcggc tgatgaattg atgagggatc
1561 agggcattac ttctgcatcc tcgactgcaa acatgaactg ccgaaggctg ccttctggtt
1621 gtgtgctgca ggacactcca aatgggtttg ttaaggtcac atgggttgaa catacagaat
1681 atgatgaggc atctgtgcac ccgctctacc ggcctcttct ccggtctggt cttgcccttg
1741 gtgcagggcg atggatcgcg acattacagc ggcagtgcga atgcttggcc cttctcatgt
1801 cttctattgc attgccagag aacgactcat cagctatcca tcctgaaggt aaacggagca
1861 tgttgaagtt ggcaaggagg atgacggaca acttctgtgc aggggtgagc acatcatcta
1921 cccgtgagtg gagcaaactg gttggattga caggcaacat tggggaggat gtgcatgtaa
1981 tggcgcggaa gagtgtggat gaacctggaa cgccgccagg tgtggtgctt agtgctgcta
2041 catctgtgtg gatgcctgtg atgcctgaac ggctcttcaa cttcttgcac aacaaggggc
2101 tgcgtgctga atgggatatc ctcagcaatg gtggccctat gcaggaggtg acaagcattg
2161 ccaaggggca acagaatggc aataccgtat gtctactgaa ggctagtccc accaaagaca
2221 agcagaacag catgctgatc ctacaggaga cgtgtgcaga cgcatccggt tcaatggttg
2281 tgtatgctcc tgtagacatc ccagcaatgc accttgtcat gagtggtggg gattcgtcat
2341 gcgtcgccct tcttccatca ggttttgcca tcctgcctgc tgggcctagc atcggcgcag
2401 atcacaagat gggcggttca ttgctcaccg ttgcattcca gatacttgcc aacagccagc
2461 ccagtgctaa gctcacggtg gagtcagtcg agaccgtgag caaccttatc tcctgcacca
2521 tcaagaagat caagacggcg ctgcattgcg acgtgtgaac ccaacaaggg gggacttttg
2581 gcctagtggg agcggctgtg gcgatgagcc tgagtcaaga acgaaccgcg acataggaag
2641 ggacctttgc taggtggcaa ggaccggacg gggcaggtcc ttagcacaga gcaatggtgg
2701 tggttcgggt attgactcag cctctcccgc ctccgttctc tcctgtgact ggtgcatgtt
2761 gaagtgaacc tgcattttgg acgccatgta gcaggccatc tttctttctt tttccttttt
2821 ctttttcttt ttcttttttt agggagaagg gagtcatctg tgttttttgt tggctggctc
2881 agggtgttgg tgtttctggt ttctagcttt tgttacaggg agatgtgata cattttgtag
2941 aagctccgaa ttgtcgtgct ggtatgtgag gttctgatca taggtctgtg tttgatagtc
3001 tcgagctatc aacgcctggc aaatgcaaac cttgttatgc taaaatatgt tttagatcaa
3061 tctgattctg aaagctgttt acatgtccc
//