LOCUS AK112075 2151 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-123-D01, full insert sequence. ACCESSION AK112075 VERSION AK112075.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2151) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2151 /clone="001-123-D01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2151 /db_xref="Osa1:LOC_Os05g44320" /note="(Rice Genome Annotation Project) periodic tryptophan protein 2, putative, expressed" /note="mapping to R05-TIGRv4S1-000944R (Chr.5: short arm=25705596, long arm=25710316, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 475 a 580 c 530 g 566 t ORIGIN 1 atgaactacc gcttccacaa cctcctgggc gcgccgtacc gcggcggcga cgccgtcttc 61 gccggtgact cctccgtcct cctctccgcc gtcggcaacc gcgtcgcgtc caccgacctc 121 tccgcctcct cctccctcac gctccccttc gagtcctcct ccaacgtcac ccgcctcgcc 181 gtctccccct cgggcgactt cctcctctcc gtcgacgacg ccggccgcgc gctctacgcc 241 aacctcggcc gccgcgccgt cctccaccgg atcgccttca agtccgcccc ctccgccgtc 301 cgcttcagcc ccgacggcaa cctcatcgcc gtcgccgtcg gtaagctcgt ccagatctgg 361 cgctcgcccg cgttccgcaa ggagttcttc cctttccacc tgctccgcac catccctggc 421 ttcgccgccg gtgtcaccgc cttcgactgg tctcccgact cctcgttcct cctcgcctcc 481 tgcaaggacc tcaccgcccg cctcttgcct gtcaagaaag gccttggagg caaaccattc 541 ctcttcgttg gccaccgcgc cgccgtggtt ggcgccttct tcgccacaga taagaagaca 601 gggagagtca ctggggctta cacaattacc aaggacggag ctatctttac atggaatttg 661 gtggaaggaa gtgatgattc gcctccacct tcaccaggga cgccagagca ggaggcggta 721 caggatggtg aggctgaatt ggacggtgac gagcccgaat tggatggcgg gagcaggaaa 781 aggaagagtt tcggagaatc ggaagaacca gacactaccc cgctgcattt cacaaggtgg 841 gagctgcaga aaaaggactt cttcatgcag tcaccggcta agttaacagc ctgtgattac 901 catagggagc ttgacatggt ggtggttggt ttctctaatg gtgtatttgg gctgtaccag 961 atgccagact ttgtgtgcct ccacttactg tcaatatcaa gggagaagat cactactgct 1021 attttcaaca gtttggggaa ttggttagtt tttggatgtg ccaaacttgg gcaattactg 1081 gtgtgggagt ggcgatcaga gagctacatt ttgaagcagc aggggcacta ctttgatgtg 1141 aactgcattg catactcacc agactcccaa ttactggcca ctggagctga tgataacaaa 1201 gtcaaggtct ggacagtctc ctctgggttc tgtttcataa cattttcgga gcatacaaac 1261 gctgttactg cagttcattt tatggccaat aatcattctc ttctcagtgc ctcccttgat 1321 gggactattc gagcatggga tctgttccgc tatcgaaatt tcaagacatt tactactgca 1381 ttgcccagac aatttgtttc tttaacggca gatcagagtg gagaagtaat atgtgctgga 1441 acacttgatt catttgagat atttgtttgg tcaatgaaga ctggtcgttt gttggatata 1501 ctcagtggtc accaaggacc agttcatggc ctaatgtttt cgccaatcaa tgctattttg 1561 gcttcatcat catgggacaa aacagttcgc ctttgggacg tatttgagag caagggtgca 1621 gtggaaactt ttcaacattc acatgatgtt cttactttgg cttatcgccc tgatggaaga 1681 cagatagcat gcagcacact agatggctta atccatttct gggatccatt tgacggcctg 1741 ttgatgtata caattgaagg ccgcagggat attgccgggg gtcgtctcat gactgacaga 1801 agatctgctg ctaatacaag tataggaaag tacttcacaa cgttgtgcta ttctgctgac 1861 gggacttata ttttagctgg aggaaacagc aaatatatat gcatgtatga tgttggagaa 1921 caggtgctct tgcgtagatt ccagatcacc cgcaatctct cgttggacgg agtacttgat 1981 tttctgaact caaagaagat gacggatgct ggtgtacttt tccttgttgg atcttggatg 2041 atgtgtgtac acaccttact gaaattttgt cacccagttt tgttgaaacg atccagaaag 2101 aatatatcat gcatcacaag tatggagtac ttgtgggttt cctaatgcat c //