LOCUS AK111998 1755 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-034-E01, full insert
sequence.
ACCESSION AK111998
VERSION AK111998.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1755)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1755
/clone="001-034-E01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1755
/db_xref="Osa1:LOC_Os11g39370"
/note="(Rice Genome Annotation Project) BRASSINOSTEROID
INSENSITIVE 1-associated receptor kinase 1 precursor,
putative, expressed"
/note="mapping to R11-TIGRv4S1-000696R (Chr.11: short
arm=22930008, long arm=22932732, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 525 a 344 c 434 g 452 t
ORIGIN
1 atcgggaata ttccaacttc tttgtctaat ctctcatcat tgaatgatat caatctagca
61 gacaacaatc tgagcggtga aatacccaaa cggttgcttc aggtgtctca ctacagttat
121 ataggtaacc atttgaattg tggccaacac ttgatttctt gtgaaggaaa caatataaat
181 acaggtggat caaataactc caaactcaag gtggttgcaa gcattggtgg agcagtaact
241 ctccttgtta tcatagtact atttctgtta tggtggcaaa gaatgcgcca ccgacctgaa
301 atatacgttg atgttccagg tcaacatgat cacaatctag agtttggaca gataaagcgg
361 ttctcattgc gagaactcca aattgcaacc aacaatttca gcgagcaaaa tgttcttggc
421 aagggtggtt ttggtaaggt gtacaaagga gtgctttcag gtccacatgg cagaaaggtt
481 gcagttaaaa gactgtttga agtggaaaaa cctgaagggg aaatagcttt cctgagagaa
541 gttgaattga taagcattgc tgtgcacaag aacatattaa gattgatagg attctgcacg
601 actacaaaag agcgactctt ggtctaccct tacatggaga atcttagtgt tgcttcccgt
661 ttgagagata tcaaactaaa tgaaccagca ttagattggc caacaagagt gcgaattgcc
721 cttggcgctg cccgtggctt ggaatacctt catgagcact gcaaccccaa gattatccac
781 cgcgatgtca aggcagccaa tgtcctgctt gatggaaact ttgaagcagt ggtaggagac
841 tttgggttgg cgaagatgat agacagagag aggaatacag ttacgaccgg ggttcgcggg
901 acaatgggcc atatagctcc tgagtacctg aagacaggaa ggccatcagt gaagacagac
961 atatttggat atggtgtaat gttgttagaa atagtgacag gagagcgtgc agtgttccct
1021 gaattctcgg aaggagacag tgagatcatg ctcaatgatc aagtgaaaag gttggtgcaa
1081 ggaggacgat tgacagacat tgtggaccac aacctggaca ctgcatacga tttgcaacag
1141 ctggagaaga tgatccaaat agcactcctc tgcactcatg tggagcctca tcttcgccct
1201 gctatgtcag aggttgtgca gatgctggaa ggcaatgttg tcccagcgga gcaatgggag
1261 gagtggcagg tggctgaact tgcccggcgg catcagcatg agatgaacca acagcgcagg
1321 ctgttcagct tcagtgagga gtctctcaat atccaggaag ccattcagct atccagtggc
1381 agataactgg aagatcatac aattgtatca catgagcttc acttgtttcc caagaaaggg
1441 tgaaggagcg aggagtctct caatatccag gaagacattc agctatccgg tggcagataa
1501 ctggaagatc atacaattgt atcacatgag cttcacttgt ttcccaagaa agggtgaaag
1561 gagacaacag tactcactat agttgtggat tgttaggaat agcctagagt cctcacggtt
1621 tgcataagta actgtatcta acctttatgc tgtgaacaca atgtcgtgca gctacatctc
1681 gttcagacat tcatgtgtat acatagacat agactacaga ctactataga ttatattcta
1741 tagtgttttt gtgtt
//