LOCUS AK111989 1992 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-032-C01, full insert
sequence.
ACCESSION AK111989
VERSION AK111989.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1992)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1992
/clone="001-032-C01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1992
/db_xref="Osa1:LOC_Os10g10130"
/note="(Rice Genome Annotation Project) OsWAK112d - OsWAK
receptor-like protein kinase, expressed"
/note="mapping to R10-TIGRv4S1-000145R (Chr.10: short
arm=5305817, long arm=5308348, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 624 a 391 c 419 g 558 t
ORIGIN
1 cataattgcg ctcgacaatg tgggacaatc acagtcccgt ttccgtttgg ccttgaagag
61 ggttgctccg caaggaaacg ttttcagctc aactgctccg acaagacaaa ttcggtcctc
121 aagttcaatg actattttca ggtgacgtat ataaatgtca gtgaaggact tctgggcatc
181 aaacacaact catcgctgga ggagcaacta ttcaatataa tgatggaaat gatgacttct
241 gataatgagc cagacctatt tgttgaccct cttgaatcag tctctgtgca atgggccgtt
301 gccaacctga catgccaaga ggcgcaacac aacacttctg gatatgcatg tgtaagtacc
361 agcagctcct gcttgaatgt ccttagctcc atggatggtt atgttggcta cagatgcagt
421 tgcttgcctg gttatcgtgg aaatccatac atcctagatg gctgcgaaga tatcgacgag
481 tgccgagaga caccaggaat ttgtaaagga gtttgcaaga ataccgttgg aaactacagc
541 tgcaccaagt gccctgatca taccgagtac gatattttaa gaatgcagtg tactccaata
601 agaaagaaaa gcttctactt aggtattata attggcctta gcagtggctt tggaatgcta
661 cttcttggat taagtggaat agttctcatt cgaagatgga aaagacatgc acagaaaaga
721 ctgcagacga agtatttccg aaagaaccag ggccttctat tggaacaatt gatatcatcg
781 gatgaaaatg ctagtgagaa gacaaaaatt ttctccttag aagagcttaa aaaggcgaca
841 aataactttg ataccacacg tatccttggc cgtggagggc atggaacagt atacaaaggt
901 atcttatcta accaacatgt ggtggctatt aaaaaggcca aagttataag ggaatgcgag
961 attaatgatt tcatcaacga ggtttcgatt ctttctcaga taaatcaccg aaatattgtt
1021 aaactctttg gatgctgtct tgaaactgag gtccccttat tagtctatga ttttattccc
1081 aatggttcat tgttcggact acttcatcca gattccagta gcacaatcta tttatcatgg
1141 ggtgactgcc taaggattgc agcagaagca gctggagctc tatattatct ccactctgca
1201 gcatcaattt ccatcttcca ccgtgatgtg aagtcatcta atatactctt ggatgcaaac
1261 tatactgcta aagtttcaga ttttggtgct tcaagatcag ttcccatcga tcaaacccat
1321 atcatcacaa atgtacaggg tacatttggt tacttggatc cagaatatta ccaaactagg
1381 cagctaaatg agaagagtga tgtctatagt tttggtgtgg tactcctaga acttcttctg
1441 agaaagcaac ccatttttac aataaactct gggatgaaac aaaatttgtg tagttacttc
1501 ctttcagaga ttaaaaccag gccaattaca gatatggtcg atgctcaagt tctcgaagaa
1561 gcaaatgagg aagatatcaa agaagttgca tcccttgctg agatgtgctt gaagctaaaa
1621 ggtgaagaaa ggcccacgat gaagaaagta gagatgacgt tacagcttct gcgaacaaaa
1681 acgatgaact catctcaagt agatccaacc attgaccaag agattcaaac tgttctgact
1741 gaaggagcca gtgacccaga gatacaacca ttagtaacaa atttggatgt tgatagagct
1801 aatgcagcat ctcaacgctt ccaaatatca tgctatagct tggagcaaga attcttgtca
1861 tctgctagct taccacggta gatgtgttta tcctatttct gatgtgttta gttaacttgc
1921 atatgtattg tgtacttgca gtcatgtatg ttgaaatgag aaattatact atatgccaaa
1981 aaaaaaaaaa tc
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