LOCUS AK111984 2158 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-022-F05, full insert
sequence.
ACCESSION AK111984
VERSION AK111984.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2158)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2158
/clone="001-022-F05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 32..1513
/db_xref="Osa1:LOC_Os08g34380"
/note="(Rice Genome Annotation Project) receptor-like
kinase, putative, expressed"
/note="mapping to R08-TIGRv4S1-000624R (Chr.8: short
arm=21445184, long arm=21450676, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99501.1"
/translation="MASNLFLLLFFLVVSYAPFLAFSSEPLNPEVEALIAIRQGLVDP
HGVLNNWDEDSVDPCSWAMVTCSAHNLVIGLGAPSQGLSGTLSGRIANLTNLEQVLLQ
NNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSLSGAFPS
SLAKIPQLSFLDLSYNNLTGPVPHFPTRTFNVVGNPMICGSSSGSHAGNANAAECATV
VAPVTVPFPLDSTPSSSSRKPPLDWQTRKRIAVGTARGLLYLHEQCDPKIIHRDVKAA
NVLLDECHEAVVGDFGLAKLLDHGDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGF
GILLLELVTGQRALEVGKGSGVIQHQKGVMLDWVRKVHQEKLHDLLVDQDLGPHYDRI
EVAEMVQVALLCTQFQPSHRPRMSEVVRMLEGDGLAEKWEANHRPAAMAAAAAPHELG
YDHRNDSNGSVFFNDFHDNDSSLSSDEVRSIDMVEEMELSGPR"
BASE COUNT 449 a 641 c 617 g 451 t
ORIGIN
1 attcctccca ccgctccgct cccccattcc aatggcctcc aacctcttcc tcctcctctt
61 cttcctcgtc gtctcctacg cgccgttcct cgccttctcc tccgagcccc tcaaccctga
121 agtggaggcg ctgatcgcca tcaggcaggg gctggtcgac ccgcacggcg tgctgaacaa
181 ctgggacgag gactccgtcg acccctgcag ctgggccatg gtcacctgct ccgcccacaa
241 cctcgtcatc ggcctgggag cgcccagcca gggattgtcg gggaccctgt ccggcaggat
301 cgccaacctc accaatcttg aacaagtgct gctgcagaac aacaacatca ccggccggct
361 gccgccggag ctgggcgcgc tgccgaggct gcagacgctc gacctctcca acaaccgctt
421 ctccggccgc gtccccgaca cgctcggccg cctctccacc ctccgatacc tgaggctaaa
481 caacaacagc ttgtccgggg cgttcccgtc gtcgctggcc aagatcccac agctctcctt
541 cctggacttg tcctacaaca acctcactgg ccctgttcct cacttcccca caagaacatt
601 caacgtcgtg ggcaatccaa tgatatgcgg gagcagcagc ggcagccatg cggggaacgc
661 gaacgcagcg gagtgcgcca ccgtggtcgc cccggtcacc gtgccattcc cgctggactc
721 cactccgagc agcagcagca ggaagccgcc gctggactgg cagacgagga agcggatcgc
781 ggtggggacg gcgaggggat tgctgtacct gcacgagcag tgcgacccaa agatcatcca
841 ccgcgacgtg aaggccgcga acgtgctgct ggacgagtgc cacgaggccg tcgtcggcga
901 cttcgggctc gccaagctgc tcgaccacgg cgactcccac gtcaccacgg cggtgcgcgg
961 cacggtgggg cacatcgcgc cggagtacct ctccacgggg cagtcgtcgg agaagaccga
1021 cgtgttcggc ttcggcatcc tgctgctcga gctcgtcacc ggccagcgcg cgctcgaggt
1081 cggcaagggc tccggcgtca tccagcacca gaagggcgtc atgctcgatt gggtgaggaa
1141 ggtgcaccaa gagaagctgc atgacttgct agtggaccaa gatttggggc ctcactacga
1201 caggatagag gtggcggaga tggtgcaggt ggcgctgctc tgcacccagt tccagccgtc
1261 tcaccggccg aggatgtcgg aggtggtccg gatgctggag ggagacgggc tcgccgagaa
1321 atgggaggcc aaccaccggc cggcggcgat ggcggcggcg gcggcgcccc atgagctcgg
1381 ctacgaccac cgcaacgact ccaacggctc cgtcttcttc aacgacttcc acgacaacga
1441 cagcagcctt agcagcgacg aggtgcggtc catcgacatg gtagaggaga tggagctgtc
1501 agggccaagg tagcagcaga atgcagcaga gcattcagag cactgaaaaa gaaattcaga
1561 gaatcagata ttcagggaga gtacttcagg aaaaaaagag aagaaaaata tattacagag
1621 ggaagggatt ggatttgttg ctagctggag tagtacgagt agtttcaaag tgattgagat
1681 gctttttagt tttagaccac agtgtgtagt ttctgtctga tcaaagagag gccctttccc
1741 cgagaaagat gtaaagaaaa aggggctcct cctctccggt ttctcttttg cttcttttca
1801 caggcttctt tatcttttgc tgctgctgct ttcttttctc tctttctttt gttgatttgg
1861 ggacggacat ggcacatgca gcgctgcaga agacctttgg tttgcattct ggccctgatc
1921 tcgagcaaac ttttgcagta cacccctgtt catatatgta tgggcttctt ctgaattctg
1981 aactccttat ctgtatcact gtatgtaagg ggagggatgt tgatagagcc ttgagagaga
2041 catggagtca ttttgactgc tttgtgacct gtaaagataa tcactccatt tctttttgta
2101 tgtgcaacag taaatgatcg aatctgatag tgggaatgtt ggatgcattg ttctcacg
//