LOCUS AK111981 1237 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-009-E07, full insert
sequence.
ACCESSION AK111981
VERSION AK111981.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1237)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1237
/clone="001-009-E07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 46..942
/db_xref="Osa1:LOC_Os10g27060"
/db_xref="RAP-DB:Os10g0410700"
/note="(RAP Annotation release2) Similar to SET domain
protein 123"
/note="(Rice Genome Annotation Project) SET domain
protein 123, putative, expressed"
/note="mapping to R10-TIGRv4S1-000346R (Chr.10: short
arm=13929787, long arm=13932440, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99500.1"
/translation="MFHHLRRRLLCTAAAPPIRVALTESSGRGVFATRPISAGEVLHS
AQPLVSHPSPPLIHEVCYSCLRRKSGSGGGSSGSCYFCSDACREHAKGFHGVEKKADW
SLFDDHCSSRGLKYPYMAKRLACMVISGAVSADCLDILQPARLHQGTLTEMEEEFALL
DSTFRKAGFQEEITTFLTKEWYINVLARIRINAFRIELVASSYENLLSSAVASVSCDA
AVGNAVYMLPSFYNHDCDPNTHIVWLASADARLKALRNIEEGEELRICYIDASMDVDA
RQRILAEGFGFECRCQRCLSGD"
BASE COUNT 279 a 328 c 315 g 315 t
ORIGIN
1 ctcaatcaga atcagcggct gagatctctg ccagccgtcc actccatgtt ccaccacctc
61 cgccgccgcc tcctctgcac cgcggcggcg ccgccgatcc gcgtggcgct gacggagtcc
121 tccggccgag gggtcttcgc cacccgcccc atctccgccg gcgaggtcct ccactccgcg
181 cagcccctcg tctcccaccc ttcccctccc ctcatccacg aggtgtgcta cagctgcctc
241 aggaggaagt ccgggagcgg cggcggctcg agcgggagct gctacttctg cagcgacgcg
301 tgcagggagc acgccaaggg attccatggc gttgaaaaga aagcggattg gtctttgttt
361 gatgaccact gcagttcacg cggtctaaag tacccgtaca tggcaaagcg actagcttgc
421 atggttatct caggagctgt tagtgcagac tgtcttgaca tactccagcc agcccgtttg
481 caccagggga cacttacaga gatggaggaa gagtttgcgt tgttggattc cacttttagg
541 aaggcagggt ttcaggaaga aatcacaact tttttgacca aagagtggta catcaatgtg
601 ctggcaagga tacgcataaa tgcattccgc attgaactgg ttgcaagttc atatgagaac
661 cttctatcct cagcagtagc ctcagtatct tgtgatgcgg cagttggcaa tgctgtctat
721 atgcttccct ctttctataa ccatgactgt gatccaaata ctcacatagt ttggttggcc
781 agcgcagacg cgagattaaa ggccctccgc aacatcgaag aaggtgaaga gctgcgcatc
841 tgctacattg acgcgagcat ggacgtcgat gcccgtcaga ggattctcgc cgaaggattt
901 ggcttcgaat gccgctgcca acggtgcttg tctggagatt aaaacaccat ccctttttcg
961 ttgtattttc catccttttg gcatgcacat tgaagccaac cgaggttaat taccattgta
1021 aacttttcaa agatcagttg aagccaggag tcaccaatgt aactgccagg tgctcctgtt
1081 tggaagattt gtaacgtgtt ggtgtgtgtg tgtcgacaag agtacgaata ctgaatgttg
1141 ttgattatta ccccgatgtt taagcattag acttttggac attattagac atttgtttga
1201 catgttactg ccatgccaat aacattggtg tttacag
//