LOCUS AK111941 1661 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-021-E10, full insert
sequence.
ACCESSION AK111941
VERSION AK111941.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1661)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1661
/clone="001-021-E10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1661
/db_xref="Osa1:LOC_Os08g44330"
/note="(Rice Genome Annotation Project) peptidyl-prolyl
cis-trans isomerase, putative, expressed"
/note="mapping to R08-TIGRv4S1-000997F (Chr.8: short
arm=27761792, long arm=27765926, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 508 a 319 c 375 g 459 t
ORIGIN
1 tactcattct ggttcaaacg atcccatcat ctccaaagag attcatgctg gcccagtaaa
61 ggttatgaaa tataaccatg ttcacgatgt tgtgatatct gctgatgcca aaggactctt
121 ggaatactgg tctccgtcta ccctcaaatt tccagaagac gcggtgaact ttcgtttaaa
181 aacagacaca aatctatttg aaatcgcaaa atgcaagact agcgtgtctg ctattgagat
241 gagcaatgac ggcactcaat ttgttgttac atcccctgat cgtaggatac gggtattttg
301 gttcaaaact gggaaactaa gacgtgtata tgatgagtcc cttgaggtgg cacaagatct
361 gcagaaaagt gatatcccga tgtaccgtct tgatgctatt gattttgggc gaagaatggc
421 tgttgagaag gaaatagaaa agaccgaaaa tgttccacag cctaatgctg tatttgatga
481 gagcagcaat tttcttattt atgctaccct tttgggcata aagattataa atttgcacac
541 aaataaggtt tcaagaatcc tggggaaggt agaaaacaat gaacgttttc tgaggattgc
601 tctataccaa ggtgataaag ggaataagaa ggttagaaaa attccttcag tagctgccaa
661 tgtcaatgac agcaaggagc ctttatctga cccaacgctg ctatgctgtg ccttcaagaa
721 gcatcgaata tatctcttta gtcgtagaga acctgaggag cctgaagacg caaccaaggg
781 tagggatgtt ttcaatgaaa aacccccacc ggaagagctt ttggctgtat cagatttagg
841 gaagactgct acaacatcac tccctgataa tttggtgatg catacttcta tgggtgatat
901 tcacttgaga ttatatccag aagagtgtcc aaaaactgtg gagaatttca ctacccattg
961 ccggaatggt tattatgata atctcatatt tcatcgtgtg attaaaggct ttatgattca
1021 gactggagac cctttggggg atggcactgg tgggcaatca atctggggaa gggagttcga
1081 agatgaattt cacaaaagct tgagacatga taggcctttt actctttcaa tggccaatgc
1141 tggaccaaat accaatgggt cccaattctt tatcacaact gtggcaactc catggctaga
1201 caacaaacac acagtgtttg gtagagttgt gaaagggatg gatgttgttc agcaaatcga
1261 gaaggtcaag accgacaaga atgacaaacc atatcaggat gtgaagatct tgaacgttac
1321 agttccaaag acataagctc aaacaattgg tttgacattg tacgcatgag gttcttccac
1381 cctttgcaag cctgtgaaag acaaatgttc tgaactttat gtgctgctgt ggtgcatcga
1441 gttggtcctt caaacctcaa cccagaggca gcaccatatt attagaaagc actgcctttg
1501 atgaggtatg tgttccgagt tttaactagc tttcccatcc ataacccaag ggcaatggga
1561 ctgtaacatt tttgctgtac acgggattgg tattgcaatt taacaatgga aaaaatgtaa
1621 cgagccagtt agatgaggat acatggacga tttttccatg c
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