LOCUS AK111914 3052 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033128F17, full insert
sequence.
ACCESSION AK111914
VERSION AK111914.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3052)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3052
/clone="J033128F17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3052
/db_xref="Osa1:LOC_Os04g48070"
/note="(Rice Genome Annotation Project) homeobox protein
OCL1, putative, expressed"
/note="mapping to R04-TIGRv4S1-000921R (Chr.4: short
arm=28381612, long arm=28387916, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 636 a 774 c 940 g 702 t
ORIGIN
1 gtgctcgctc tcgctttgct tcccctaatc ttctcccggg ccagggggga agaggggcgg
61 aattcgggca cgagctttgg agttggagat cacttcggcg acggcgtggt ccccgccggc
121 atgcagttcc cgttctccgg cgctggcccg ggcgtcttca cgtcatcgcc ggcgctctcc
181 ctcgcgctgg ctgacgcggt ggcaggccgg aacagcggcg gcggtgggaa gatggttacc
241 gcggcccatg gcggcgtcgg cggaggagga ggaggaggac gcgcgaaggc gagggacgcg
301 ttggaggtgg agaacgagat gagccggtcc gggagcgacc acctcgacgt cgtctcttgc
361 ggcgacgcgg gcggcggcgg cggcgacgac gacgatgacg aggacgccga gcacggcaac
421 ccgcccaagc gcaagaagcg gtaccaccgc cacacgccgc agcagatcca agagctggaa
481 gcgatgttca aggaatgccc ccacccagac gagaagcagc gcgccgagct gagcaagcgg
541 ctcggcctcg aaccccggca ggtcaagttc tggttccaga atcggcgaac gcagatgaag
601 atgcaactgg agcgacacga gaactcgctg ctgaagcagg agaacgataa gctgcggtcc
661 gagaacctgt caatccggga ggccacgagc aacgcggtgt gcgttggctg cggcggcccg
721 gcgatgctcg gggaggtgtc cctggaggag caccaccttc gcgtcgagaa cgcgaggctc
781 aaggacgagc tcagccgagt gtgcgcgctc gccgccaagt tccttggcaa gtccatctct
841 gtcatggcgc caccgcagat gcatcagcct catcctgtgc caggctcgtc gctggagctt
901 gcggttgggg gtatcggttc gatgccatca gccacgatgc ccatctcgac gatcactgat
961 tttgctggcg ccatgtccag ttcaatgggc acggtgatca cgcccatgaa gtctgaggct
1021 gaaccatcgg caatggctgg cattgacaag tccttgttct tggagctagc aatgagtgca
1081 atggatgagc tagtcaagat ggctcagatg ggggatccgc tatggattcc aggtgcctcc
1141 gtaccttcct cgccggcaaa gaagagtcta aacttcgagg agtacctaaa caccttccca
1201 ccttgcatcg gggtgaagcc tgaagggtat gtatcagagg catctagaga atctggcatt
1261 gtcatcattg acgatggcgc cgcgcttgtg gagaccctca tggatgagcg acggtggtcc
1321 gatatgttct catgcatgat tgccaaggca tcaaccactg aggagatttc tactggtgtt
1381 gctgggagta gaaatggtgc attgcttctt atgcaggcag agctacaggt gctttctcct
1441 cttgtgccta ttagagaggt gaagtttctc aggttctcca aacagctggc tgatggtgta
1501 tgggctgtag tggacgtttc ggctgatgaa ttgatgaggg atcagggcat tacttctgca
1561 tcctcgactg caaacatgaa ctgccgaagg ctgccttctg gttgtgtgct gcaggacact
1621 ccaaatgggt ttgttaaggt cacatgggtt gaacatacag aatatgatga ggcatctgtg
1681 cacccgctct accggcctct tctccggtct ggtcttgccc ttggtgcagg gcgatggatc
1741 gcgacattac agcggcagtg cgaatgcttg gcccttctca tgtcttctat tgcattgcca
1801 gagaacgact catcagctat ccatcctgaa ggtaaacgga gcatgttgaa gttggcaagg
1861 aggatgacgg acaacttctg tgcaggggtg agcacatcat ctacccgtga atggagcaaa
1921 ctggttggat tgacaggcaa cattggggag gatgtgcatg taatggcgcg gaagagtgtg
1981 gatgaacctg gaacgccgcc aggtgtggtg cttagtgctg ctacatctgt gtggatgcct
2041 gtgatgcctg aacggctctt caacttcttg cacaacaagg ggctgcgtgc tgaatgggat
2101 atcctcagca atggtggccc tatgcaggag gtgacaagca ttgccaaggg gcaacagaat
2161 ggcaataccg tatgtctact gaaggctagt cccaccaaag acaagcagaa cagcatgctg
2221 atcctacagg agacgtgtgc agacgcatcc ggttcaatgg ttgtgtatgc tcctgtagac
2281 atcccagcaa tgcaccttgt catgagtggt ggggattcgt catgcgtcgc ccttcttcca
2341 tcaggttttg ccatcctgcc tgctgggcct agcatcggcg cagatcacaa gatgggcggt
2401 tcattgctca ccgttgcatt ccagatactt gccaacagcc agcccagtgc taagctcacg
2461 gtggagtcag tcgagaccgt gagcaacctt atctcctgca ccatcaagaa gatcaagacg
2521 gcgctgcatt gcgacgtgtg aacccaacag gggggacttt tggcctagtg ggagcggctg
2581 tggcgatgag cctgagtcaa gaacgaaccg cgacatagga agggaccttt gctaggtggc
2641 aaggaccgga cggggcaggt ccttagcaca gagcaatggt ggtggttcgg gtattgactc
2701 agcctctccc gcctccgttc tctcctgtga ctggtgcatg ttgaagtgaa cctgcatttt
2761 ggaccccatg tagcaggcca tctttctttc tttttccttt ttctttttct ttttcttttt
2821 ttagggagaa gggagtcatc tgtgtttttt gttggctggc tcagggtgtt ggtgtttctg
2881 gtttctagct tttgttacag ggagatgtga tacattttgt agaagctccg aattgtcgtg
2941 ctggtatgtg aggttctgat cataggtctg tgtttgatag tctcgagcta tcaacgcctg
3001 gcaaatgcaa accttgttat gctaaaatat gttttagatc aatctgattc cg
//