LOCUS AK111906 1233 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033058P06, full insert
sequence.
ACCESSION AK111906
VERSION AK111906.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1233)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1233
/clone="J033058P06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 44..940
/db_xref="Osa1:LOC_Os10g27060"
/note="(Rice Genome Annotation Project) SET domain
protein 123, putative, expressed"
/note="mapping to R10-TIGRv4S1-000346R (Chr.10: short
arm=13929789, long arm=13932436, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99472.1"
/translation="MFHHLRRRLLCTAAAPPIRVALTESSGRGVFATRPISAGEVLHS
AQPLVSHPSPPLIHEVCYSCLRRKSGSGGGSSGSCYFCSDACREHAKGFHGVEKKADW
SLFDDHCSSRGLKYPYMAKRLACMVISGAVSADCLDILQPARLHQGTLTEMEEEFALL
DSTFRKAGFQEEITTFLTKEWYINVLARIRINAFRIELVASSYENLLSSAVASVSCDA
AVGNAVYMLPSFYNHDCDPNTHIVWLASADARLKALRNIEEGEELRICYIDASMDVDA
RQRILAEGFGFECRCQRCLSGD"
BASE COUNT 276 a 326 c 316 g 315 t
ORIGIN
1 gtatcagaat cagcggctga gatctctgcc agccgtccac tccatgttcc accacctccg
61 ccgccgcctc ctctgcaccg cggcggcgcc gccgatccgc gtggcgctga cggagtcctc
121 cggccgaggg gtcttcgcca cccgccccat ctccgccggc gaggtcctcc actccgcgca
181 gcccctcgtc tcccaccctt cccctcccct catccacgag gtgtgctaca gctgcctcag
241 gaggaagtcc gggagcggcg gcggctcgag cgggagctgc tacttctgca gcgacgcgtg
301 cagggagcac gccaagggat tccatggcgt tgaaaagaaa gcggattggt ctttgtttga
361 tgaccactgc agttcacgcg gtctaaagta cccgtacatg gcaaagcgac tagcttgcat
421 ggttatctca ggagctgtta gtgcagactg tcttgacata ctccagccag cccgtttgca
481 ccaggggaca cttacagaga tggaggaaga gtttgcgttg ttggattcca cttttaggaa
541 ggcagggttt caggaagaaa tcacaacttt tttgaccaaa gagtggtaca tcaatgtgct
601 ggcaaggata cgcataaatg cattccgcat tgaactggtt gcaagttcat atgagaacct
661 tctatcctca gcagtagcct cagtatcttg tgatgcggca gttggcaatg ctgtctatat
721 gcttccctct ttctataacc atgactgtga tccaaatact cacatagttt ggttggccag
781 cgcggacgcg agattaaagg ccctccgcaa catcgaagaa ggtgaagagc tgcgcatctg
841 ctacattgac gcgagcatgg acgtcgatgc ccgtcagagg attctcgccg aaggatttgg
901 cttcgaatgc cgctgccaac ggtgcttgtc tggagattaa aacaccatcc ctttttcgtt
961 gtattttcca tccttttggc atgcacattg aagccaaccg aggttaatta ccattgtaaa
1021 cttttcaaag atcagttgaa gccaggagtc accaatgtaa ctgccaggtg ctcctgtttg
1081 gaagatttgt aacgtgttgg tgtgtgtgtg tcgacaagag tacgaatact gaatgttgtt
1141 gattattacc ccgatgttta agcattagac ttttggacat tattagacat ttgtttgaca
1201 tgttactgcc atgccaataa cattggtgtt tac
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