LOCUS AK111892 2599 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033079C01, full insert
sequence.
ACCESSION AK111892
VERSION AK111892.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2599)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2599
/clone="J033079C01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2599
/db_xref="Osa1:LOC_Os07g41090"
/db_xref="RAP-DB:Os07g0602200"
/note="(RAP Annotation release2) Similar to HDA1"
/note="(Rice Genome Annotation Project) histone
deacetylase 6, putative, expressed"
/note="mapping to R07-TIGRv4S1-000862F (Chr.7: short
arm=24590340, long arm=24596658, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 661 a 539 c 668 g 731 t
ORIGIN
1 gggtccattt cggaatcgtc gtctcgcctc cacttccgac ttccgagtcg tctcgcctcg
61 ccggcgcagg atggcggcgg cgacgaccgc cgcggcggcg gcgagggtgg ggctgctgta
121 gacgagagga tgtgcgcgca cgcgacgccc gacggggagg agcacccgga gaaccccgag
181 aggctgcggg ccatctggcg caagctctcc gccgacggcg tcgcctccag gtgcatgatc
241 atgaaagcga aggaagctga ggacaagtat atagcttctg tccatagcca gaaccatatc
301 aagctgatga ggagtatcag ctcaaaagaa tatgattccc gtcgaaacaa gattgctaga
361 aaatttaatt ccatttactt caacaagggc tcctcagagt ctgcttttct tgcagctggt
421 tctgtgattg aggtagctga gaaggttgct gcaggagagt taagttctgc tattgctcta
481 gtccgacctc caggtcacca tgctgaacat aatgaggcaa tgggtttttg cctcttcaac
541 aatgtagcaa ttgctgctga ttatctctta aatgagagga ctgacttagg tatcaagaag
601 atattgattg tcgattggga tgttcatcat ggaaatggca cacaaaagat gttttatagt
661 gatcctcgtg tattgttctt ttcagttcac agatttgatt atggcagctt ctatcctgct
721 gaaggggatg catcttactg tttcattggg gaaggagatg gtaaagggta caacattaac
781 gtgccctggg aacatggaaa atgtggtgat gcagattata ttgctgcatg ggaccatgta
841 ctacttcctg ttgctgaagc atttaaccct gatatagtct tggtgtctgc tgggtttgat
901 gcagcactgg gtgatcctct tggtggctgc tgcatcactc ccaatggata tgctctgcta
961 ctgacaaagc tcttaggttt tgcccaaggg aggatagtga tggctcttga aggaggctat
1021 aaccttagat ccatagcaaa ttcagttagt gcttgtgcta aagttttgtt gggagacaag
1081 ttcagatttg acactcctga tatgcaaccg tttgaatctt catggagagt tatacaagcg
1141 gtacgtgatg aattgaagac gttctggcct gttctgagta atagattgcc agagaatata
1201 tcattgagga gtaggccctc acaaattgag ctgtattctt ctggttctga ctctgaagtt
1261 gaagatctcc ctgatgctat tgcttctgtc aatattattc aaattactta tggtattata
1321 agtgaaagcc tctcaaagtt gaaccttgat gaagacaaaa tcgcaacaaa gaccacctca
1381 agtaatgtaa tggttgaagg tccaactgat tcagttgaac cacaaaatga tggatctgct
1441 gcggtgtcaa ctgaaggaat atcatctcta tcttctactt ggagatcaga actgtcaaaa
1501 gtatatgttt ggtatgccag ctttggttca aacatgtgga caccaaggtt tctgtgctac
1561 atccaagggg gaaaggctga gggtatgaat ataccatgtt ttggatctca tgacacaagc
1621 ccaccaagag gttccatgtg gaagactgtg cctcatagat tgttttttgg tagatcctct
1681 actccttgct ggggaactgg tggtgttgct tttctcaacc ctgagataaa ccacactgag
1741 aactcctatg tctgcatgta taaaataacg ctcgagcagt tcaatgatgt attgtttcaa
1801 gagaatcgtt tagtgaagga gaacggcgaa agtggaaaaa ctgagtctcc tgactctcct
1861 ttgattggct tgtctgaaat agagtttgtt tccagaaaca agggtgtcca ccttgcacct
1921 attaaggata gctggtactc caatgtactt taccttgggg aggaggataa ccttccaatt
1981 cttacaatga catgcccgtc atcagacgta gagcgatgca gatccggaga gctgccattg
2041 tgtcctccat ccaagaccta ctccgccacc ctgataaggg gactaatgga agggaagcac
2101 ctggatgcag atgcggccgc tagttacatc aacactgcag ctaccagagg cctgtgaagg
2161 ctgcttccct atgcattatg gtttgtagtt ttgcactaag catgtaagtg gctaacccac
2221 gaatccactt attttcactt ataagtgggt ttgcagatta gccacttacg cgcttagttt
2281 gtacagccag taggagcgta ctaggactgt aggaggaatg atgagtaggt ttgcaggact
2341 gtaaagatag tgcgttgatc attcaggacc acggaggctt atgtagaggc ctcgtgaatg
2401 tcctgccaat tggggaatct ggacccgatc aagtttccct aggattgtta agaatctagc
2461 tagcgcttgt accctgggtt ggtcattgtc tcattggtgc tctccggatt ggtttgtttt
2521 ggggtggaaa aaaaaacact agtcgatgtt gcctggtttt tcatgctgtt acctggcgag
2581 gaaatgacga tttcttgtg
//