LOCUS AK111887 1511 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033068L17, full insert
sequence.
ACCESSION AK111887
VERSION AK111887.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1511)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1511
/clone="J033068L17"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1511
/db_xref="Osa1:LOC_Os12g40510"
/db_xref="RAP-DB:Os12g0597000"
/note="(RAP Annotation release2) Similar to Calcineurin
B-like protein 2 (SOS3-like calcium binding protein 1)"
/note="(Rice Genome Annotation Project) calcineurin
B-like protein 3, putative, expressed"
/note="mapping to R12-TIGRv4S1-000751F (Chr.12: short
arm=25029664, long arm=25034664, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 346 a 323 c 413 g 429 t
ORIGIN
1 gagacgcacg cgcacacgca tacgcatcgc agccagttca tcctcgattc ctcccccgaa
61 tttccttcgc gatctcaccc cgcgtgccct agctagctat cgaatcccgt cacctcggcg
121 gcggcggcga gatcggagct ccgggttaac ctcctccacc gcgaggcgtg gaacctctct
181 ctctctcgct ctctccacct gaggatcgaa gatcgaaacc cctggcaccg gctcgggccg
241 cggaatgggc ggccgcggtg agtagctagg tctgcggcgg cggagttgtt gttgttggtg
301 gtggtggtgg tggaggagga gttggcggcg gagggggcgg gggcgttggt ggtggtggtg
361 gtgggagagt atcatggtgc agtgtctcga cggggtgagg cagctgctgg cggtcgtgtt
421 caagtgctgc gacctcgagc tgaagcagcc gcgggggctc gaggatcccc aggtcctcgc
481 gagggagacc gtcttcagcg tgagcgaggt cgaggcgctg tacgagctct tcaagaagat
541 aagcagtgct gtgattgatg acgggctgat taacaaggag gagtttcagt tggcgctgtt
601 aaagaccagc aagaaggaga gcctgttcgc cgaccgtgta tttgatttgt ttgacacaaa
661 acacaatgga attttaggat ttgatgaatt tgctcgtgca ctctcagtat ttcatccaag
721 tgctccactt gatgagaaga ttgacttttc attccagtta tatgatctca agcaacaagg
781 ctatattgag agacaagagg ttaagcagat ggttgttgct acacttgctg agtctggaat
841 gaatctttct gatgaaatta tagagagcat aatcgataag acatttgagg aggcagacac
901 aaagcatgat ggaagaattg ataaagaaga gtggcgcaat ctggttcttc gtcatccctc
961 tttgctgaag aacatgactc tccagtacct caaggacatc accactacat ttccaagctt
1021 tgtcttccat tcccaggtcg atgacacctg aattcttgga tttgtttgaa ctcaaaccat
1081 cagaagaatg ctcatgccgg ttcattaaga attttgatat tgggttgttg gattgggcag
1141 agactccaga gctctgtagg atgttgcatg ttcgatttga gaagttctca aatctttaaa
1201 ttgatgtaac tttgtttctt tcgtttggaa gtttagtgtg gctggagact ttcggggaga
1261 tgttaaattt ctgtctgaat ccgtagatcc tttattctct tcccctcttt tctgtttttc
1321 tggctagcaa tcagaatatc ttttctgttt ttttggctag caatcagaat atcggatata
1381 gttttgtgaa tctttcattt tgcgtacaaa ataggaacct tcaaaaaaat tgatcgtgct
1441 ggaaaatgtt ctgttggagt ttgcaaattg caatgatcat gaaatgctct ccttttttga
1501 gagtttgcac c
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