LOCUS AK111878 1785 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033046I12, full insert
sequence.
ACCESSION AK111878
VERSION AK111878.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1785)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1785
/clone="J033046I12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 501..1436
/db_xref="Osa1:LOC_Os05g03884"
/db_xref="RAP-DB:Os05g0129700"
/note="(RAP Annotation release2) KNOX class homeodomain
protein (Knotted1-type homeobox protein OSH71)"
/note="(Rice Genome Annotation Project) homeotic protein
knotted-1, putative, expressed"
/note="mapping to R05-TIGRv4S1-000090R (Chr.5: short
arm=1702539, long arm=1708864, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG99457.1"
/translation="MEDLYSIHPGISRGGGGGGGGAASEASGVAGGGSSPPHPPPPAT
TAAAADLTELMKAQIAGHPSYPSLLSAYIECRKVGAPPEVTTLLEEIGREGRGGGGGA
TAGGEIGLDPELDEFMETYCRVLERYKEELTRPFDEAASFLTGIHTQLASLCGGAPPP
TDNSDEMVGSSEDEPCSGDADAADFGQEHSSRLADHELKEMLLKKYSGCLSRLRSEFL
KKRKKGKLPKDARSALMDWWNTHYRWPYPTEEDKVRLAAMTGLDPKQINNWFINQRKR
HWKPSEDMRFALMEGVTGGSSSGTTLYFDTGTIGP"
BASE COUNT 415 a 474 c 508 g 388 t
ORIGIN
1 gaatctttgt ttccatgtct gtctgaattc tgatctcttc ttctctctgc ctgcagacac
61 aagcaggtga ctcctccatc ctcccaaagc aaagcaccca tgtatcccgc tgctgccgct
121 gctacctaca agtgcaccct gcagaagctg cttctccttc tccttctgat ctgaggagct
181 gcagctgctg ctccagcagc agaggctgca gtgcaatccg ctgccaaatt cctcttcttc
241 tccttcctac tagcttttct cttcttcttc ttcttcttct tggaaagctg gaacttggag
301 ctgcttaagc ttacacctgc tgattcatct ccagctgctg ctgctgctga ttcagtatta
361 ttatgtgtgg agatgtacag tagatgagga ggaaggaagt agctactgga tagctagctg
421 agctgagcta agctgagcta agcttcttgg ctaggtaggt agctagaggt gaggtgaggt
481 gggggaagag gggattggac atggaggatc tgtacagcat ccacccggga atctcccgcg
541 gcggcggtgg gggaggagga ggtgcggcca gcgaggcgtc cggggtcgcc ggagggggga
601 gctcgccgcc gcatccccca ccgccggcga cgacggcggc ggcggcggat ctgacggagc
661 tgatgaaggc gcagatcgcc ggccacccga gctacccttc cctcctctcc gcctacatcg
721 aatgccgcaa ggttggtgcg ccgccggagg tgaccacgct gctggaggag atcggccggg
781 aggggcgcgg cggcggcggc ggcgcgacag ccggcgggga aattggcctc gatccggagc
841 tcgacgagtt catggagacg tactgccggg tgctggagcg gtacaaggaa gaactcacac
901 ggccgttcga cgaggcggcc tccttcctca ccggcatcca cacccagctc gcctccctct
961 gtggcggcgc gccgccgccc accgacaact ccgatgaaat ggtggggtct tcagaggatg
1021 agccgtgctc aggagacgcc gatgcagcag attttgggca agaacacagc tcccgcttgg
1081 ctgaccatga gctcaaagag atgttgctca agaagtacag tggctgcctc agccgcctcc
1141 ggtccgagtt cttgaagaag aggaagaaag ggaaactacc gaaagacgcg cgatcggcac
1201 ttatggactg gtggaacaca cattaccgtt ggccttaccc cacggaagag gataaggtga
1261 ggctggccgc gatgactggc ctcgacccga agcagatcaa caactggttc atcaaccaga
1321 ggaagaggca ctggaagcca tcggaggaca tgcggttcgc gctcatggag ggggtcaccg
1381 gaggatcctc ctccgggacg acactgtact tcgacaccgg cacaattggt ccatgatcag
1441 attgcactcc aaattaaatg tagcaccttg caacagacat tggcaggtat tacctgctgc
1501 tacaccctct gtgaggagca agggatgatc atatattaaa aggaaaaaaa gatgaaatca
1561 atcaataacc tcatcatttt gtcgaaatta ttgtgtatat ggtgttgtaa gagggagttg
1621 ggatgacctg taaaaacttg cctgcattca gctaccataa cattaattaa ttgtttgtat
1681 ccctgacaac tgcatcccca gttaaaacca ttttagacag gaaagagtga actatgagta
1741 atagtaacat gtagcaataa taaagatact tattttttcc cttgc
//