LOCUS AK111864 2608 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033025G23, full insert sequence. ACCESSION AK111864 VERSION AK111864.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2608) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2608 /clone="J033025G23" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 258..2333 /db_xref="Osa1:LOC_Os03g12350" /db_xref="RAP-DB:Os03g0224200" /note="(RAP Annotation release2) Similar to Response regulator 8" /note="(Rice Genome Annotation Project) two-component response regulator ARR1, putative, expressed" /note="mapping to R03-TIGRv4S1-000446F (Chr.3: short arm=6491885, long arm=6497626, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG99452.1" /translation="MAPVEDGGGVEFPVGMKVLVVDDDPTCLAVLKRMLLECRYDATT CSQATRALTMLRENRRGFDVIISDVHMPDMDGFRLLELVGLEMDLPVIMMSADSRTDI VMKGIKHGACDYLIKPVRMEELKNIWQHVIRKKFNENKEHEHSGSLDDTDRTRPTNND NEYASSANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNA VNHLGIDKAVPKKILELMNVPGLTRENVASHLQKFRLYLKRIAQHHAGIANPFCPPAS SGKVGSLGGLDFQALAASGQIPPQALAALQDELLGRPTNSLVLPGRDQSSLRLAAVKG NKPHGEREIAFGQPIYKCQNNAYGAFPQSSPAVGGMPSFSAWPNNKLGMADSTGTLGG MSNSQNSNIVLHELQQQPDAMLSGTLHSLDVKPSGIVMPSQSLNTFSASEGLSPNQNT LMIPAQSSGFLAAMPPSMKHEPVLATSQPSSSLLGGIDLVNQASTSQPLISAHGGGNL SGLVNRNPNVVPSQGISTFHTPNNPYLVSPNSMGMGSKQPPGVLKTENSDALNHSYGY LGGSNPPMDSGLLSSQSKNTQFGLLGQDDITGSWSPLPNVDSYGNTVGLSHPGSSSSS FQSSNVALGKLPDQGRGKNHGFVGKGTCIPSRFAVDEIESPTNNLSHSIGSSGDIMSP DIFGFSGQM" BASE COUNT 657 a 551 c 645 g 755 t ORIGIN 1 gagtcttctc tcttctctct ctctcgtctc tctctccccc acctcttctt ccctttcccc 61 cgcctccctc tcctcttcgt cgtcacccgc cgcctcccgc tgaatccgcg gcttgggagg 121 agacgccgga gtcgggggcg tggacggggg ttggatctgc ttgccttgat ggtggcgatt 181 ggagcgtgaa ttcgtgaggg gggcgtggtg gtggtggtgg tggttatacg gttttcggtt 241 tcgtgggcgg gggagagatg gcgccggtgg aggatggcgg cggggtggag ttccccgtgg 301 ggatgaaggt gctggtggtg gacgacgacc ctacatgcct cgccgtgctc aagaggatgc 361 tcctcgagtg ccgctacgac gcgacaactt gttctcaggc tacaagagca ttaactatgc 421 tgcgagagaa caggcgtggt tttgatgtta taattagcga tgttcatatg cctgatatgg 481 acggattcag gttacttgaa cttgttggcc ttgagatgga tctcccagtt attatgatgt 541 ctgctgattc aaggacagat atcgttatga aaggaataaa acatggagca tgtgactact 601 taattaaacc cgtcagaatg gaggagttga agaacatctg gcaacatgtt ataaggaaaa 661 agtttaatga aaacaaggag catgagcatt caggtagcct agatgataca gatcgtacca 721 gaccaaccaa taacgataat gagtatgctt catctgcaaa tgatggagct gaaggtagct 781 ggaagtctca gaaaaagaaa cgggataaag atgatgacga tggtgaattg gaaagtggtg 841 acccttcttc tacatcaaag aaaccaagag ttgtttggtc agttgaactc caccaacaat 901 ttgtaaacgc agttaatcat ctggggatag acaaagctgt tcccaagaaa attttggagt 961 tgatgaatgt tcctggttta actagggaaa atgtcgccag ccatttgcag aagttcagat 1021 tgtatctgaa gaggattgct cagcatcatg ccggaatagc taatccattc tgcccgcctg 1081 cttctagtgg taaagtaggc tcactgggag gacttgattt ccaagctttg gctgcctcag 1141 gtcagatccc tcctcaagcc ctggccgcct tgcaggatga gctcctaggg cgacctacaa 1201 atagtttggt attgcctgga agggaccagt catctttacg gcttgctgca gtcaaaggaa 1261 acaagcccca tggggagaga gaaatagcat ttggtcaacc tatatacaag tgccagaata 1321 atgcatatgg ggcattccct caaagcagtc cagctgttgg aggaatgcct tcattttcag 1381 cttggcccaa taacaaactt ggtatggcag actcaaccgg cacattggga ggcatgagta 1441 attctcagaa tagcaatata gtcttgcatg aattgcaaca gcagccagat gccatgctgt 1501 caggaaccct tcactctcta gatgtcaaac cttctgggat agttatgcct tctcagtcat 1561 taaatacttt ctcagccagt gagggtctct cccctaatca aaataccttg atgatacctg 1621 ctcagtcatc tggttttcta gcggccatgc ctccatccat gaagcatgaa cctgttcttg 1681 caacttctca accatcgagt agtctgttag gtggtattga tttggttaat caagcttcaa 1741 caagtcagcc cttaataagt gcccatggag gggggaatct ttctggcctt gtaaatcgta 1801 atccaaatgt agtaccttct caagggatca gtacttttca tactccaaat aatccatatt 1861 tggttagtcc aaattctatg ggaatgggct ccaaacaacc acctggtgtt cttaagacag 1921 aaaactctga cgctctgaac catagctatg gttatcttgg tggtagcaac ccccctatgg 1981 actctggctt actctcttca caatcaaaaa atacacagtt tggtttactg ggtcaggatg 2041 acatcactgg tagctggtcg cctctgccga atgttgacag ttatggtaat actgttgggc 2101 taagccaccc tgggtccagt tcatctagtt ttcaaagttc taatgtggct cttgggaaat 2161 tgcctgatca agggcgagga aagaatcatg gatttgttgg taaaggtact tgcattccaa 2221 gccgctttgc agtggatgag attgaatctc caactaacaa cttgagtcac agcattggaa 2281 gcagtggaga tattatgagc cctgatattt tcggatttag tggacagatg tgaaggcttc 2341 ttgaatttgt aagtagggta atcactggaa acaattttta gtgggttgat gaacggttgc 2401 cgtgtttttc atttcatcct tttttttttc cttctgtaat tggtttataa agggaataat 2461 ttatgtgaca gcatgtcgaa tcttggttta tagaaggttg ttcggtttaa acaactttgg 2521 attatttagc ctcatgtgac atagctcatt ttcctttgtt cattttttgt gtacagtttt 2581 ctgattttgt tgcaaatctt cttctctc //