LOCUS AK111849 1961 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J023145B14, full insert sequence. ACCESSION AK111849 VERSION AK111849.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1961) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1961 /clone="J023145B14" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1961 /db_xref="Osa1:LOC_Os05g37470" /db_xref="RAP-DB:Os05g0447200" /note="(RAP Annotation release2) Similar to AUX1-like protein" /note="(Rice Genome Annotation Project) auxin transporter-like protein 2, putative, expressed" /note="mapping to R05-TIGRv4S1-000755R (Chr.5: short arm=21843732, long arm=21848606, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 313 a 656 c 591 g 401 t ORIGIN 1 gtctcgaacc acgagaagct cagcagtttc ggctccgcgc gccgcctgcc tctcggtcga 61 cagcacagta aattccgccg gcgcgtggtg cagctttgcc ggcagcgtgc cgctcccacg 121 gccatttact tcgcctcctc tcctgaggca ggcgcgcggc tggagacggg aagaccgggg 181 aggacaggag gatggtgccg gccggcgacc aggcggagga ggccatcgtg gcggacgccg 241 ggaaggagga ggcggaggtg cgcgcggcca tgggcgtcga gcaggacggc aagttcagca 301 tgacgagcct cctgtggcac ggcggctccg tctgggacgc ctggttcagc tgcgcctcca 361 accaggtggc gcaggtgctc ctgacgctgc cgtactcctt ctcgcagctc gggatgctct 421 cgggcctgct gctgcaggtg ttctacggcc tcatgggcag ctggaccgcc tacctcatca 481 gcgtcctcta cgtcgagtac cgcgcccgca aggagaagga aggcgtcagc ttcaagaacc 541 acgtcatcca gtggttcgaa gttcttgatg ggctcttggg cccgtactgg aaggcggccg 601 gcctcgcctt caactgcacc ttcctgctct tcggctccgt catccagctg atcgcctgtg 661 caagtaacat atactacatc aacgaccggc tggacaagag gacatggacg tacatattcg 721 gggcgtgctg ctccaccacg gtgttcatcc cctccttcca caactaccgc atctggtcct 781 tccttggcct cggcatgacc acctacaccg cctggtacct cgccatcgcc gccgccgtcc 841 acggccaggt cgacggcgtg acgcactcgg gcccgagcaa gatggtgctc tacttcactg 901 gcgccaccaa catcctctac actttcggcg gacacgccgt cactgtagag atcatgcacg 961 cgatgtggaa gccgcagaag ttcaagtaca tctacctggt ggcgacgctg tacgtgttca 1021 cgctgacgct gccgtcggcg tcggccatgt actgggcgtt cggcgacgcg ctgctgacgc 1081 actcgaacgc cttctcgctg ctgccgcggt ccgggtggcg cgacgcggcg gtgatcctga 1141 tgctgatcca ccagttcatc acgttcgggt tcgcgtgcac cccgctctac ttcgtgtggg 1201 agaaggcgat cggcatgcac ggcacccgca gcgtcctcac ccgcgcgctc gcccgcctcc 1261 ccatcgtcgt gcccatctgg ttcctcgcca tcatcttccc cttcttcggc cccatcaact 1321 ccgccgtcgg cgcgctcctc gtcagcttca ccgtctacat catcccctcc ctctcccaca 1381 tcctcacgta ccgctccgcc tccgccagat tgaatgcggc ggagaagccg ccgccgttcc 1441 tgccgagctg gagcgggatg ttcgtggtga acgtgttcgt ggtggcgtgg gtgctggtgg 1501 tcgggttcgg cctcggcggc tgggccggcg tcaccaactt catcaagcag atcgacacgt 1561 tcgggctctt cgccaagtgc taccagtgcc cacccagggc gcacgccggg gcgcccctgc 1621 cggctccgcc gcgccactag ccaaaaaaac cgagtgccac gccgcgacgg cgcgacgccg 1681 cgcgcgggcc ggtgacaaaa ggagctagct tccccgcggg cgtcttgcct ttgtgtagta 1741 ggacagcagg tcagcagcat acatggtagg acagcgcgtg ggtcactgac tagatttacc 1801 gccctgcagg ggcttcccta tgctgcggag tcttcagttc atgtgtgttg ttggcaactt 1861 tgcgtcgtcc tcttttgttt gggagttgga tgtgaacttg gtcgtaattt gtaggttctt 1921 ctgttcatgt tacatgccag tataaaacgc catatttgtt c //