LOCUS       AK111849                1961 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J023145B14, full insert
            sequence.
ACCESSION   AK111849
VERSION     AK111849.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1961)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Rice full-length cDNA
  JOURNAL   Unpublished (2002)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1961
                     /clone="J023145B14"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1961
                     /db_xref="Osa1:LOC_Os05g37470"
                     /db_xref="RAP-DB:Os05g0447200"
                     /note="(RAP Annotation release2) Similar to AUX1-like
                     protein"
                     /note="(Rice Genome Annotation Project) auxin
                     transporter-like protein 2, putative, expressed"
                     /note="mapping to R05-TIGRv4S1-000755R (Chr.5: short
                     arm=21843732, long arm=21848606, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          313 a          656 c          591 g          401 t
ORIGIN      
        1 gtctcgaacc acgagaagct cagcagtttc ggctccgcgc gccgcctgcc tctcggtcga
       61 cagcacagta aattccgccg gcgcgtggtg cagctttgcc ggcagcgtgc cgctcccacg
      121 gccatttact tcgcctcctc tcctgaggca ggcgcgcggc tggagacggg aagaccgggg
      181 aggacaggag gatggtgccg gccggcgacc aggcggagga ggccatcgtg gcggacgccg
      241 ggaaggagga ggcggaggtg cgcgcggcca tgggcgtcga gcaggacggc aagttcagca
      301 tgacgagcct cctgtggcac ggcggctccg tctgggacgc ctggttcagc tgcgcctcca
      361 accaggtggc gcaggtgctc ctgacgctgc cgtactcctt ctcgcagctc gggatgctct
      421 cgggcctgct gctgcaggtg ttctacggcc tcatgggcag ctggaccgcc tacctcatca
      481 gcgtcctcta cgtcgagtac cgcgcccgca aggagaagga aggcgtcagc ttcaagaacc
      541 acgtcatcca gtggttcgaa gttcttgatg ggctcttggg cccgtactgg aaggcggccg
      601 gcctcgcctt caactgcacc ttcctgctct tcggctccgt catccagctg atcgcctgtg
      661 caagtaacat atactacatc aacgaccggc tggacaagag gacatggacg tacatattcg
      721 gggcgtgctg ctccaccacg gtgttcatcc cctccttcca caactaccgc atctggtcct
      781 tccttggcct cggcatgacc acctacaccg cctggtacct cgccatcgcc gccgccgtcc
      841 acggccaggt cgacggcgtg acgcactcgg gcccgagcaa gatggtgctc tacttcactg
      901 gcgccaccaa catcctctac actttcggcg gacacgccgt cactgtagag atcatgcacg
      961 cgatgtggaa gccgcagaag ttcaagtaca tctacctggt ggcgacgctg tacgtgttca
     1021 cgctgacgct gccgtcggcg tcggccatgt actgggcgtt cggcgacgcg ctgctgacgc
     1081 actcgaacgc cttctcgctg ctgccgcggt ccgggtggcg cgacgcggcg gtgatcctga
     1141 tgctgatcca ccagttcatc acgttcgggt tcgcgtgcac cccgctctac ttcgtgtggg
     1201 agaaggcgat cggcatgcac ggcacccgca gcgtcctcac ccgcgcgctc gcccgcctcc
     1261 ccatcgtcgt gcccatctgg ttcctcgcca tcatcttccc cttcttcggc cccatcaact
     1321 ccgccgtcgg cgcgctcctc gtcagcttca ccgtctacat catcccctcc ctctcccaca
     1381 tcctcacgta ccgctccgcc tccgccagat tgaatgcggc ggagaagccg ccgccgttcc
     1441 tgccgagctg gagcgggatg ttcgtggtga acgtgttcgt ggtggcgtgg gtgctggtgg
     1501 tcgggttcgg cctcggcggc tgggccggcg tcaccaactt catcaagcag atcgacacgt
     1561 tcgggctctt cgccaagtgc taccagtgcc cacccagggc gcacgccggg gcgcccctgc
     1621 cggctccgcc gcgccactag ccaaaaaaac cgagtgccac gccgcgacgg cgcgacgccg
     1681 cgcgcgggcc ggtgacaaaa ggagctagct tccccgcggg cgtcttgcct ttgtgtagta
     1741 ggacagcagg tcagcagcat acatggtagg acagcgcgtg ggtcactgac tagatttacc
     1801 gccctgcagg ggcttcccta tgctgcggag tcttcagttc atgtgtgttg ttggcaactt
     1861 tgcgtcgtcc tcttttgttt gggagttgga tgtgaacttg gtcgtaattt gtaggttctt
     1921 ctgttcatgt tacatgccag tataaaacgc catatttgtt c
//