LOCUS AK111846 2507 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023143O14, full insert
sequence.
ACCESSION AK111846
VERSION AK111846.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2507)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2507
/clone="J023143O14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2507
/db_xref="Osa1:LOC_Os03g49620"
/db_xref="RAP-DB:Os03g0703200"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) BRASSINOSTEROID
INSENSITIVE 1-associated receptor kinase 1 precursor,
putative, expressed"
/note="mapping to R03-TIGRv4S1-001292R (Chr.3: short
arm=28203664, long arm=28209052, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 630 a 551 c 684 g 642 t
ORIGIN
1 ggattgcgat ccggaggaga aggtcgccga attccgtctt atccagagat ggggaggtaa
61 aaaggagggg gatccaccta accaaccaag ttgcgtcgcg cctaaaaaaa atggccgcac
121 gcgctccgcc ccggcagcac cggtcaattc ctgctgcttc ctcgagtcaa ctgctccagc
181 gcagcgcccc acccacgcct tttacccgcg cgccagcggc ggcggcggcg gcggcggggt
241 gaggaggtga agtgggagag gcggcgtgga cctgcgacga cctgcttgct gcccagcctg
301 cgagggcaag ccactggtgc catactggac tggcttgctt gttaactggg ttagccaggg
361 actccggtat tatactacta tgatcagttc gtgtactttt tttcgccggg caagtttccc
421 caaggaactc ttttgatgct gtaattataa ctgaagagtc atggatctgc tcagcgtcct
481 cctaattata gcatctctgc tcccattttc agcatctgac cgtcaaggtg atgcactata
541 tgatatgaag ctgaagctga atgctactgg taaccagctt tctgactgga accaaaatca
601 agttaaccca tgcacttgga attctgttat ttgtgacaac aactacaatg ttgtgcaagt
661 gttttttgtt tgttccaagt tggtgtgcct gatgacagat gccctcctgc agaacattgg
721 catctatggg attcactgga gttctatcac cacgaattgg agagcttcag tttttgaatg
781 ttttgacctt gcctggtaat aagattactg gtggcatacc tgagcagatc ggcaacctat
841 ctagtttgac aagtttggat ttggaagaca atttgttggt tggaccaata ccggcttctc
901 ttggccagct ttcaaagctc caaattctga tactaagtca aaacaatctc aacggaacta
961 tacctgatac tgtagcaaga atctcaagct tgacagacat taggttagcc tacaataaac
1021 tctctggttc aatacctggt tcgctgtttc aagttgcacg ttacaacttt tctggtaata
1081 acttgacttg tggagcaaac tttctgcatc catgctcatc aagtatttct tatcaaggtt
1141 catcccatgg ctcaaaggta ggcattgtac tcggaacagt tgtaggagca atagggatac
1201 ttataatagg ggctgtgttt attgtctgta atggaaggag gaaaagccat ctacgagaag
1261 tttttgtcga tgtatcaggc gaggacgatc gaagaattgc atttggtcag ttgaaaagat
1321 ttgcctggcg agaattacaa cttgcaaccg atagtttcag tgagaaaaat gtccttggac
1381 aggggggttt cggtaaagtg tataaaggag cacttccaga tggcactaag attgctgtaa
1441 agcggttgac agattatgaa agccctggtg gggaggctgc attcttgcgt gaagtagagc
1501 ttatcagtgt tgcagttcac cggaatcttt taagattgat tggcttctgt acaacacaaa
1561 cagaacgtct acttgtttat cctttcatgc agaatcttag tgtggcctat cgtttacgag
1621 aattcaaacc tggcgaacca atattggatt ggtcagcaag gaaacgtgtg gcaataggca
1681 cagcacgtgg actggagtac ctgcacgagc actgtaatcc caagatcata catcgagatg
1741 tcaaggctgc caacgtcctg cttgatgagg attttgagcc agttgttggt gactttggcc
1801 tggcaaagtt ggttgatgta cagaagacat cagtgacaac tcaagtccgt ggaactatgg
1861 gtcacattgc gcctgaatat ctgtccacag ggaagtcatc ggagagaact gatgtttttg
1921 gttatggcat aatgcttctt gagctggtca ctggacaacg cgccatcgac ttctcacggt
1981 tggaggaaga agacgatgtg ctactgcttg accatgtgaa gaagctgcag agggaagggc
2041 agctgggcgc catcgtggac cggaacctga gcagcaacta cgacgggcag gaggtggaga
2101 tgatgataca gatcgcgctg ctgtgcacac aggcgtcgcc ggaggaccgg ccgtccatgt
2161 cggaggtggt gcggatgctg gaaggggaag gactcgcgga gcggtgggag gagtggcagc
2221 aggtggaggt gacgcggcgg caggactacg agcggatgca gcagcgcttc gactggggcg
2281 aggactccat cttcaaccag gaagccatcg agctctccgc cggcagatga cgactgcgta
2341 cgtcctgatg catgtcactt cccaatccca gtgttaatag atatacatgt atgtatatgt
2401 atggttggct cttagttacc atagggttgg ttatgtcact aaagaaccca tgtcaagcct
2461 ccatttgtgt agaggaaaac agctagagac gcatgtgttc agagttc
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