LOCUS AK111749 4355 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023054J06, full insert
sequence.
ACCESSION AK111749
VERSION AK111749.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 4355)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..4355
/clone="J023054J06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..4355
/db_xref="Osa1:LOC_Os05g49590"
/db_xref="RAP-DB:Os05g0571000"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) SPA1, putative,
expressed"
/note="mapping to R05-TIGRv4S1-001085R (Chr.5: short
arm=28361948, long arm=28369660, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 1166 a 904 c 1146 g 1139 t
ORIGIN
1 gatttaatcc tctccccctt cttcctcgtc cctctgctgc tgccgctgct gcttctcccc
61 cttccttctg tgccacacac tcgcgaggag aggagagaag aggaggaggc gaagaaaaaa
121 aaaacctaag cgcttttccc tttcgggaaa ttccgcgcgc tcgcctcccc cgccgcggcg
181 ccaccgccgc cgcccccgcc gcggattcgc cgccttcctc aggcggcgca gcgtgccgcg
241 caggcgtcgt cgtctcggta atcgcgcgag gggtcgtggt cgctctggga tggggttgtg
301 gcgctgagat ggtggtgggc ggcgcgaggt tgtgttcgcc gtgaggtatg gttcccaacc
361 gctgaaattt gggggggcgc ggaggatggt ccggcgaggg gtgatctcat tgcgagcagg
421 atggcgggga cgcatggttt tcgtagggta ggcgtggtcg agatggaagc ggcgacggcg
481 gctgaggtgg ccggtgccgg cagcggcacg gatggcgatt tgcagattaa aggcagcaag
541 gagaatggtc agactgcgga gcagccggcg gccagcgagg cgcttgagat gccctccact
601 ccgctcccgc tcccgaggga catagattgg tcggagcatt tctccttctt caattcggtg
661 ggcgggtttg ggggcagcat ggatggcgcg aggggcttga ctagtgttgg cctatctaat
721 tctgagtcga ggccggatag tgtaacccag atccagagct gtttgaacaa tgcagacgag
781 agggttgagg agctcacatt gaaaaattgc atcagctccg atgcgcaaca tgaggtttca
841 gctggtggaa gcacgagcag cggggagaag cctacagtta tgaggggtct gtggggtaat
901 tttacaagga tgtcatggag agctagcgac gtggctaaca gggaaaaatt agcagcgaat
961 cgtggtgacg ttgcaaactt gagggtcggt gacatgccca tcagggaaaa tttggcggtg
1021 agcttcggca acaatatgat ctcacgaaat gatgcatcca acaaggaaat gggaatgagc
1081 catggggatc atgcgaataa cgagttcaat ttgccgtttg gtaatcagca gccttttctg
1141 tctccacggc ctaatcagaa tgagcagcga gttgaaaggg agaatgctct catagtgagt
1201 agcttttcag ctagaattct ggatcagatg aggagtaaga atgtaacacc ttcgtctggg
1261 gttcagagct tcccatttaa gagtgtgttg aagggtaaag gtgttgtata tcaaggtgca
1321 cgagaggaga tccaagttca aggtaatgca aggaccagag cccctatgga taagattcgc
1381 aagatcccta acataccaca ggattccatg gctagaatgg atggtacaat ctttggcagt
1441 ggtggaaatg ttttagaacc acagtgcgag ggaaccagcc taagggaact aattaagcct
1501 gcacgccaaa caatgagcaa gtttgagaaa atgcacttct ttaagcagat tcttgatctc
1561 gtagacaaat ctcatgccca gggttttagt ttacagcatt tgcgcccatc atactttact
1621 atctcagcct caaaccaagt aaaatatatt ggttcttatg gtacccaaga tttatcagcc
1681 ccaagcaaac tggatattgc gacggatgat attttcaata caaaaagata ccttgatccc
1741 aaagttgagt cccaagattc taatggcgat aatgcttcaa tcacaaagta tcaaaaagtt
1801 ggtgaacaag gatccattgc tgtaaggcga ccagtgcata ccttttgggc taatcacaga
1861 gggggcaacc aaagtgaagg tgttgatcct ggtgctttgt ggcagggcaa ttcgagctgc
1921 actgtccgag aacgttttaa ggctgcagaa cctttctatg gtggcagtat gccctatgct
1981 caacgaccat caagttctgg caaccaacag tcagtatttg aattgaggat gctggaggaa
2041 agctggtaca gaagtccaga agagatcagt cagttgaaag gcatacttcc atcaaacatc
2101 tacagccttg gggttctttt gtttgagctc ttttgctgct gtgaaacatg ggaggtacat
2161 tgtgctgcaa tgtcagatct ccgtcatcgc attttgcccc caaattttct ttcagaaagt
2221 cctaaagaag ctggtttctg tctttggtta ctccatccag atccctgttc tcggcctaag
2281 gcaagagata ttctagggtg tgacttgata aatgagggtc gagatctgtc cttgttagat
2341 aataaaacac cagttgctgt caatgaagaa gacaccgaat ctggtttgct actgggcttc
2401 ctttctcaac tcaaggaaga aaaggagatg cacgctgcca aattgtcagc tgatcttgcg
2461 agcttggaaa cagatatcgc agaggttgag aaaagacact caatgaggat gggatttagt
2521 ttagaggaca tggatgtact ggcaggttct aatgatctct caggagcttc tgcatgtgcc
2581 ctgggaggtg catcactctc aggtttgcca ccatctttgt gcagatcgag catatatgag
2641 gagcgggtca tgagaaactt ggagcagctt gaaaatgcat attactccat gaggtccacc
2701 attgacacat cggaggccaa tataattaaa cgagttgata atgatgcttt aagggttcgt
2761 caaaattttc acgagctgca tagtgatgct aatgctatcg atgagcaagc agaccccctt
2821 ggatggtttt tcgatggctt atgcaagtat gcccggtata gtaggtttga agtacgggga
2881 attctgaaga atgcagatat acttaactca ccaaatgtga tttgttcgtt aagttttgat
2941 cgggatgaag aatattttgc tgctgctggt gtttcaaaga aaattaaaat atttgaattt
3001 gatgcccttt taaatgatcg tgttgatatt cattacccat tgatagagat gcctagcaaa
3061 tccaagctta gctgtgtctg ttggaacagc tacataaaaa attacttggc atcaacagac
3121 tacgatggca ctgttcagtt gtgggatgca agctcgggtc aaggattcac gcagtttacg
3181 gagcaccgaa aaagagcttg gtctgtaagt ttctcagagg tggatccaac taaattggca
3241 agtggaagtg atgattgctg cgtgaaagtt tggagtatta accagaaaaa ttgcactgat
3301 tccatcagaa acgtggccaa cgtgtgctgt gtacagttct ccccatactc ctctcgtatg
3361 ttagcttttg gctcggctga ttataagata tactgttatg atctgaggaa tacaagaatc
3421 ccatggtgta ctatttctgg gcatggaaaa gctgtcagct atgtacgatt cttggatcca
3481 gaaacactta tctctgcatc aactgataac accttgaaaa tatgggatct caaccagact
3541 aattccagtg gattatctac tgatgcctgc agtatgacgt tgagtggcca taccaatgag
3601 aagaattttg tggggttatc tgttcacgat ggatacataa cttgtggttc tgaaaataat
3661 gaagtatttt cttattacaa aacctttccc atgccaataa cttctcacaa gttcggttca
3721 atcgacccaa taactggaca agagacaaat gatgataacc aacaatttgt gtccagtgtt
3781 tgctggcgag ggaggtcgaa catggtagtg gctgccaatt ctactggcag cattaaagtg
3841 cttgagcttg tgtgaataag ttgatgggaa ctttagtgaa tgggaagatc tgaatcctaa
3901 ggttgccata ctgcatggtt gatgcttagc tgcccttgta tatttccgtg aacgtctgcc
3961 ttcgcagcag gcagctactc aagcatcaac catccttcgg ttctgggctt cattccatca
4021 gagcatttgc aacactcagt ttaccccatt caagcaacct acagcgccaa actattggtg
4081 gtgaagagat cggcgaacaa agagaacaaa gagatcttcg aaggtatgaa aggtactggc
4141 aattcttgaa gatgattgcc accaccaaaa tattttgttt gtatggcgtt ttgacatagt
4201 acaagtcagc attttaagga gggccttagg ggtctgtaca gattagggtc acaaagggtc
4261 gatgtaatat aatatatcat gaaattggat atgcttttgg gctaaaaagc cttacatgat
4321 acatctactc gagaaatatc actgggaatt aaccc
//