LOCUS AK111746 1724 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023047E15, full insert
sequence.
ACCESSION AK111746
VERSION AK111746.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1724)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1724
/clone="J023047E15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 168..1499
/db_xref="Osa1:LOC_Os07g48090"
/db_xref="RAP-DB:Os07g0678300"
/note="(RAP Annotation release2) Similar to OsPK4"
/note="(Rice Genome Annotation Project) CBL-interacting
serine/threonine-protein kinase 11, putative, expressed"
/note="mapping to R07-TIGRv4S1-001119F (Chr.7: short
arm=28709056, long arm=28710776, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99394.1"
/translation="MPPSTGSVPPAASTPAAGDEATAAGRVLLGRYELGGLLGRGASA
KVYLARDLLTGRDVAIKSFPNPRHGGGLRGGEEDVLLRPAPIEREAAILPRLRHRHVM
RLREILATRKKVHFVLDLAAGGELFSLLDASGRMTEDLARHYFRQLISAVRYCHSRGV
YHRDIKPENLLLDDAGDLKVADFGLGAVADGALHHTLCGTPAYVAPEILSRKGYNPAK
VDIWSCGVVLFVLAAGYLPFNDASLVNMYRKIYAGKFRCPAWFSPELRCLVRRILDPN
PATRIDTEEIITHPWFRQDASHFAMAQLMQHGHDEEAKFKTEFKEDDMARDMTAFDIL
ACSPGSDLSGLFGAEPGKERVFVGEPAAAVLSRVEEAGKKEGYMVTREGKKGTGPVYV
KGENGGIVAKVCVFKIADAVSVVEVVKGYGAEAARFWKARLEPAMKPPAAI"
BASE COUNT 297 a 596 c 541 g 290 t
ORIGIN
1 gtccaactca aaacgagccc ccaaatccca gagaggagtc gcgagctttt catcaatcct
61 ctgattttcc cccaggtttc cccacccgca aagagcctca aaattccccc tcctctgtcg
121 cgaccgatcg cgacgacggc gccggacgag cagacaccgc cgccacgatg ccgccctcca
181 ccggctccgt cccacccgcc gcatcaacgc cggcggctgg ggacgaggcc accgccgccg
241 ggagggtact cctcggcagg tacgagctcg gcggcctcct cggccgcggc gcctccgcca
301 aggtgtacct cgcccgcgac ctcctcaccg gccgcgacgt cgccatcaag tccttcccca
361 acccccgcca cggcggcggc ctccgcggcg gcgaggagga tgtcctcctc cgccccgcgc
421 ccatcgagcg ggaggcggcc attctcccca ggctgcgcca ccgccacgtg atgcgcctcc
481 gcgagattct ggccacgcgc aagaaggtcc acttcgtcct cgacctcgcc gccggcggcg
541 agctcttctc cctgctcgac gcgtccggcc gcatgacgga ggacctcgcg cggcactact
601 tccggcagct catctccgcc gtccggtact gccactcccg tggcgtgtac caccgcgaca
661 tcaagccgga gaacctcctc ctcgacgacg cgggcgacct caaggtggcc gacttcggcc
721 tcggcgccgt cgccgacggc gccctccacc acaccctctg cggcaccccg gcctacgtgg
781 cgccggagat cctgtcgagg aaggggtaca acccagcgaa ggtggacatc tggtcctgcg
841 gcgtcgtcct cttcgtgctc gccgcggggt acctcccctt caacgacgcc agcctcgtca
901 acatgtaccg caagatctac gccggcaagt tccggtgccc ggcctggttc tcgccggagc
961 tccggtgcct ggtccgccgc atcctggacc ccaacccggc gacccgcatt gacacggagg
1021 agatcatcac ccacccgtgg ttccgccagg acgcgagcca cttcgcgatg gcgcagctga
1081 tgcagcacgg ccacgacgag gaggccaaat tcaagaccga gttcaaggag gacgacatgg
1141 cccgggacat gacggcgttc gacatactcg catgctcccc tggctccgac ctctccggcc
1201 tcttcggcgc cgagccgggg aaggagcggg tgttcgtcgg cgagccggcg gcggcggtgc
1261 tatcccgagt ggaggaggcc gggaagaagg aagggtacat ggtaacgaga gaagggaaga
1321 agggcaccgg gccggtgtac gtgaaaggcg agaacggcgg cattgtggcc aaggtctgcg
1381 tgttcaagat cgccgacgcg gtgtccgtcg tcgaggtggt gaaaggctac ggcgccgagg
1441 ccgcccggtt ctggaaggcc aggctcgagc cggcgatgaa gcctccggca gccatctgag
1501 ctgccgacga gagggtgagc tggttcgttg ccgcgtgctt gcaaattgca atcgagattt
1561 gttcttgtgt tgttcagtgt aaccgtgtga gtgatgtctc ccgtcggcga attgtttggg
1621 tttttttggg atgtatttgt tcatggacgg cgtcatggag gtagtatgta agcacgattt
1681 ggtgatgtct gggctggaaa ataagaggca aaaaattccc tgcg
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