LOCUS AK111743 3205 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023052J10, full insert
sequence.
ACCESSION AK111743
VERSION AK111743.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3205)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3205
/clone="J023052J10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3205
/db_xref="Osa1:LOC_Os06g16390"
/db_xref="RAP-DB:Os06g0275500"
/note="(RAP Annotation release2) Similar to Polycomb
protein EZ1 (Enhancer of zeste protein 1)"
/note="(Rice Genome Annotation Project) polycomb protein
EZ1, putative, expressed"
/note="mapping to R06-TIGRv4S1-000424F (Chr.6: short
arm=9352713, long arm=9361033, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 869 a 698 c 843 g 795 t
ORIGIN
1 gcttcccttt cctccaccca cgccgcgacg acgagtcgcc gccgcggcct cgccggcgac
61 caggtctccg gcggccccgc cgcccgccgt gacggggctc cggccttccg ccctcctccc
121 cgcaccgccc gctatctcgg ctccccgact cctgcattcc cccgactctc ccccggccgc
181 cgccgccgcc atttctgact ctttctccgc ggcgcgtctc tcctccgaga gcacgccgac
241 cgcctcccga agcggcgtcg cggccgcggc ggccgccgcc ttctcccgcc cctgatggct
301 ggcgattccc gaaatgagcc gatgttttgc gaggaaggga gcagtgaatc gggctatgtt
361 ctatgtgtta ttgattcgct gaagaagaaa atcacatcgg accgctttgt ttacatccag
421 aaaagggtag aggagaatag cattaagctt agcccgatta cactgcactc tcacaatttg
481 tcaaaaaata ggcaaactag tacatccaac agtacagatt tagtctcgaa tttgctcaca
541 aagaggaaag aagatgccct gtgtgctgtg aatagtcgtg agtcatctcc tgatgaaagt
601 gaaggtgcca attgccaaga tgagtgttca tcgactgtta ttgtgggtgg aaatctatcc
661 gcgaggaatt ctgtccgtcc gattagacta ccagaagtgg caacactccc tccatataca
721 acttggatat ttttggacag gaaccagcgg atgcaagaag accaatctgt acttggtcgt
781 cgaaggattt actatgatac aaactgtggc gaagctttaa tttgcagtga tagtgaagat
841 gaagctgttg aggacgagga agagaaaaag gagttcaagg attctgaaga ttgcataatt
901 cggatgacca ttcaagaatg tggcatgtct gatgctgtgc ttgaaactct agctcgagat
961 atcgaaaggg ctcctgatga tataaaggcc aggtatgaga tcctacgggg agaaacctga
1021 gggttcttcc aagaaagtgt ctgaacttaa tgtcaaaatg gaagacgtgt acggtgataa
1081 agatctggat gcagcattgg attcctttga caatctcttt tgtcgccgat gtttggtttt
1141 tgattgcaag ctacatgggt gttctcaaga tttagtattt ccgactgaaa agcaggcacc
1201 attgtgcagc tcggatgagg gtacaccatg tggtattcac tgttacaaac tggtctctaa
1261 accagatgct atcatggaga ttgattctca tttgcttgtt gatgttgagg agccaacatc
1321 ggacaatcta aaggatcaga tagggtcaaa taagaaaaag cttggttcta gtgggcagaa
1381 aacaaaatct caacaaagtg aaagttcttc aactgcaagg gtttcctcag aaagcagtga
1441 gtctgaagta caactgttaa gcaataaatc cccgcaacac tctcctggcc tctcaaaaaa
1501 taagcttggc gcaaaaggtg gaatcaagaa aagtactaac agaagaattg ctgagagaat
1561 tctaatgagt gtgaaaaagg ggcaacagga aatgtcaccg gactctaatt ctattgttaa
1621 tggatgccat tggcctaggg atatgaagct tagatctgat actaggagtg gtattaagga
1681 ttctgttgta tcctcacagt gtaattctcc aagcacaagg agtttagaaa gaagggcaca
1741 cttcaaatgg agaataactc atcttttgtg gatgctcaga gtgattcaat ggaggataca
1801 aataatgaac attcagcaac agatggttgt gatagttcaa ggaaagagga atgtgttgat
1861 gagagtatat gcaggcaaga agctcatggc aggtcctgga aagtgattga gcaagggctt
1921 ctattgaaag gattagagat ttttggaaag aacagttgtt taattgctcg gaaccttctg
1981 ggtgggatga aaacatgcac agatgttttt cagtatatga attacattga aaacagcagt
2041 gcatctggag ctcttagtgg tgttgattct cttgttaaag gatatatgaa gggtaatgaa
2101 ttacggacaa gatcaagatt tgtgagaagg cgaggaaggg tccgccgttt gaagtacacc
2161 tggaaaactg caggctacca ttttataagg aaaaggatta cagaaaggaa ggatcagcct
2221 tgtcgacaat acactccttg tggttgccag tctgcatgtg ggaagcaatg tccatgtctc
2281 acaaatggta cctgctgtga gaaatactgt gggtgcccga aaatgtgcaa gaatcgcttc
2341 cgaggttgcc attgcgcaaa gagtcagtgt cgcagccggc agtgtccatg ctttgctgct
2401 gacagggaat gtgatcctga tgtgtgtaga aactgctggg tagggtgcgg tgatggtaca
2461 ttgggagtcc ctaaccaaag aggtgataat tatgaatgcc ggaacatgaa actgctgctt
2521 aaacagtaac aaagggtctt acttgggaga tctgatgttt ctggctgggg agctttcctc
2581 aagaatagtg ttgggaagca cgagtatctt ggcgagtaca ctggggagct tatctcccat
2641 aaagaagctg acaagcgtgg aaagatatat gaccgtgaga attcatcgtt ccttttcaac
2701 ttgaacaatg agtacgttct tgatgcctac agaatgggcg acaagctgaa gttcgccaac
2761 cattcccctg atccaaactg ctacgccaag gtcatcatgg tagcaggcga tcacagggtg
2821 gggatcttcg ccaaagagcg gatcagcgcg ggcgaggagc tgttctacga ctaccgctac
2881 gagcccgacc gggccccggc gtgggctcgc aagcccgagg ggcccggtgc caaggacgac
2941 gcccagcctt ccaccgggag agcaaagaag ctcgcccact gaagaagaag aagaagaaga
3001 agatcagccg ttgattcttt tgttgtcttg gttgattctt tcgttattgg tgagggggac
3061 cgagaactct gacggtgatt agcgccgtaa ggaaaacttt cctgccattc gttggccccc
3121 tcgattcgat tcgttgattt tccctgaatt ctgtaactgc tgcacctgtc gcctgttcaa
3181 cttcaaaaga tttttctgat tctgg
//