LOCUS AK111735 1495 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J023045O14, full insert
sequence.
ACCESSION AK111735
VERSION AK111735.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1495)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1495
/clone="J023045O14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1495
/db_xref="Osa1:LOC_Os01g39770"
/db_xref="RAP-DB:Os01g0579600"
/note="(RAP Annotation release2) EF-Hand type domain
containing protein"
/note="(Rice Genome Annotation Project) calcineurin
B-like protein 10, putative, expressed"
/note="mapping to R01-TIGRv4S1-000917F (Chr.1: short
arm=22754680, long arm=22757600, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 363 a 347 c 375 g 410 t
ORIGIN
1 ggatggggag aggcggggtg agagagaagc gcacgggtga ttgatcttgc atccatggag
61 tcgggctacg gcttccgctt ctccgacgac gacgtggagt cggcgagctc gctgacggtg
121 ggggagcggc tgtgcgcggc gttcctgccg ttcgtcgcca ttgccgaggc cgtcttcttc
181 gcgctcaccg actgcctcgc cgacctcctc ccgccgtccg ccgccgcctc ccgccaccgc
241 cgctccgccg cttcctccta cctcgccgcc gtcgccagga aatggaacca ccagcagcgt
301 ggcagggtcg gcatcggctg cacctccctc accctccgcc agctcgcccg cctcgccgac
361 gaatccagat gcttctccgt gaacgaggtg gaggcgctgt tcgagctcta caagaagatc
421 agctgctcca tcatcgacga cggactcatc cacaaggaag agctccagct ggcattgttt
481 aagactccaa gcggccagaa tctttttctt gatagggttt ttgatttatt tgatgaaaag
541 aaaaatggta taatagagtt tgatgagttt attcatgctc ttagcgtctt ccatccattg
601 gcaccattgg aagacaagat aaattgtaag tacacttctt tcagacacta ccttcttaaa
661 ttcatgtatc gaggtatatt tacaataagg cctccctttg gattgtttta gttgcattta
721 ggttgtatga cttgagacaa actgggttta ttgagcgtga ggaggttagt tcatcaaggc
781 actctgtatt aatttgcaac aagtatgtta tttgtgttct agtacaaatc tggtagtgac
841 ggcatggtct gttttgcagg ttatgcaaat ggttatcgct attttgtcgg aatctgatat
901 gaaattgtca gaagaacttc tcgaggccat tattgataag acatttgaag atgctgatgc
961 tgatagggat ggaaaaataa accaacaaga atggaaggaa ttcgtattgc ggcatcctaa
1021 tctattgaag aacatgacac tgccttatct aagggacatc acgacagttt tccctagttt
1081 tgtcttcaac accgcggttg aagattgaac ataatctagg aatcacttga aggttgaact
1141 gcgcaagatc cccggatgat ggtgacaggt tgcctgctga tcctgccaac tttgtgctgc
1201 atgtttcttg gccagctctc aggaatggaa acagatatga gaattcatca tgagccctcg
1261 ctgaagaacc acaattggtg gttgttaatc aagatcaatg ctttgagact caatttttct
1321 gcaaaccgag gctcatctat gacagcaaat tggtcaactt ttagcagaca atcaagttcg
1381 tgtacataca tcctctcggt agttcaggat taaggagcat agtagtgagc aactgtatat
1441 atgattggtt gtaggactcg ggaaattcaa cgtttttgta tccggtcagt ttggg
//