LOCUS AK111637 1942 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J013123B09, full insert sequence. ACCESSION AK111637 VERSION AK111637.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1942) AUTHORS Kikuchi,S. TITLE Direct Submission JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Rice full-length cDNA JOURNAL Unpublished (2002) REFERENCE 3 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 32K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1942 /clone="J013123B09" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1942 /db_xref="Osa1:LOC_Os06g51260" /db_xref="RAP-DB:Os06g0728700" /note="(RAP Annotation release2) Homeodomain-like containing protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R06-TIGRv4S1-001229R (Chr.6: short arm=31024962, long arm=31027984, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 503 a 451 c 486 g 502 t ORIGIN 1 gtgtttcctc ttcctctcgc atcctagcgg cagcggcagc ggcagcctcc tcctcctccg 61 ccgccgccgc tcctcttccc tctcccaact cccgtacggg cgtacggccg cctcgtcgcc 121 ggattttttt tttcgttccc ccggcgagct tgcactctct tttcttcgat tctctttcgg 181 ctttgcttct tcggtcgctt ttttttttgg ctgttcctgg tcgatcccgg cgaaggaggt 241 ggtcgggaag caagatttga actactcctc ctcatggctt ccatgccgca gctggaggaa 301 aaggattcat ccgatttggc aatcaacaaa ggcccgtcgc tggatcttgt caaatctccc 361 ttgatgatga atgatgcatc tgcaactgta actgcaatgc agcccaacga ggggatggag 421 gagttccctg tcaaggttcg gaagccttac acgatcacca agcagcggga gaagtggacg 481 gaagaagagc acgacaagtt ccttgaggca ttgaagctgt atggtcgctc ttggcgtcag 541 atacaagagc acattggcac aaagactgct gtccaaattc ggagccatgc ccagaagttt 601 ttctcaaagg tggtgcgtga gcccggttcc aataatgcga ttgagatccc tccacctagg 661 ccaaagagaa aaccacttca tccgtaccct cgaaagtgtg cgaattctgg atcggacgca 721 aatccagcaa cagcgcaatt gaagcttgct cctggctcat cttcatctgg ctctgatcaa 781 gagaatggtt ctcctatatc ggtgctatct gcgatgcagt cagatgcttt tggatcgtca 841 gtatccaatc catcaaccag atgtacctcc ccagcgtcat ctgacgatgg aaataacatt 901 cccacattca cgagtgggga agataataat gtgccttgtg aaccaacagt gatagatccg 961 tcccagtccc acaaggaaat agaccaagat agaaaagacg tgaataatat gtctgaagag 1021 gattcttcag aagaagaggt gcaagaaaca agcttgaagc tatttgggag gacagttgtc 1081 atcccagatc caaggaagag aagctcctca gatccgaagc atgaaagtga ggagcagata 1141 tcacagcctt ccaatgaaga aatgttgcag gcttcttcat cggttgggga gattccagcg 1201 gcatattgtg caccaaatgg ttggtttatg tcatacaatt ctttcccatt ccaattcggt 1261 gaatcagcgg cagatgctag aattccccct ttacacgtgt ggtggcctta ctacggtttt 1321 gctcccatta gccatcctag aggactaagc acagtgatgc agcagactga aggtagtgac 1381 gagagtgacg gtgtgaagag ccactcatcc gaatcaagtt cggactccgg ggaaaatgtg 1441 cagatgaccg ctccccagag ctcgagaata gtggaatcac ttggagcgat ttacgtccga 1501 gactcaggtt caagttttga gctaaaaccg agcgcaaatt cagcgtttgt aagagtgaag 1561 ccaagcaaca gcggagatga aggggtaata aggggatttg tgccttataa aagatgcaaa 1621 tttcaataac gcaggcaagc gggtattttc ttgaaagctg ctaatttaac agagaagagt 1681 aggagcacga acgttgcttg catcactgta tttttttttg tttgtttgcg gggattggtg 1741 gtgcattaat gaattgtttg ctgcttgcac cttaaaaagg atagagatgg tgtaagcagt 1801 ttgttgctgt aagaatgtta catgtagact agtacttaaa attatagggg atgccaatct 1861 ctgccctgat gatgttgtaa aagcagtacg caccatgttt tacctctggt tgaaagctaa 1921 gctgttaatg gaaattgatc tc //