LOCUS       AK111637                1942 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J013123B09, full insert
            sequence.
ACCESSION   AK111637
VERSION     AK111637.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1942)
  AUTHORS   Kikuchi,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
            Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
            Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
            Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
            Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
            Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
            Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
            Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
            Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Rice full-length cDNA
  JOURNAL   Unpublished (2002)
REFERENCE   3
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 32K full-length cDNA clones from
            japonica rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
            Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
            Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., 
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., 
            Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., 
            Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., 
            Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., 
            Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., 
            Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., 
            Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences 
            Center and Genome Science Laboratory in Riken: Adachi,J., 
            Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., 
            Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., 
            Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., 
            Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., 
            Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., 
            Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., 
            Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., 
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., 
            Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., 
            Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., 
            Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., 
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., 
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., 
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1942
                     /clone="J013123B09"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1942
                     /db_xref="Osa1:LOC_Os06g51260"
                     /db_xref="RAP-DB:Os06g0728700"
                     /note="(RAP Annotation release2) Homeodomain-like
                     containing protein"
                     /note="(Rice Genome Annotation Project) expressed protein"
                     /note="mapping to R06-TIGRv4S1-001229R (Chr.6: short
                     arm=31024962, long arm=31027984, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          503 a          451 c          486 g          502 t
ORIGIN      
        1 gtgtttcctc ttcctctcgc atcctagcgg cagcggcagc ggcagcctcc tcctcctccg
       61 ccgccgccgc tcctcttccc tctcccaact cccgtacggg cgtacggccg cctcgtcgcc
      121 ggattttttt tttcgttccc ccggcgagct tgcactctct tttcttcgat tctctttcgg
      181 ctttgcttct tcggtcgctt ttttttttgg ctgttcctgg tcgatcccgg cgaaggaggt
      241 ggtcgggaag caagatttga actactcctc ctcatggctt ccatgccgca gctggaggaa
      301 aaggattcat ccgatttggc aatcaacaaa ggcccgtcgc tggatcttgt caaatctccc
      361 ttgatgatga atgatgcatc tgcaactgta actgcaatgc agcccaacga ggggatggag
      421 gagttccctg tcaaggttcg gaagccttac acgatcacca agcagcggga gaagtggacg
      481 gaagaagagc acgacaagtt ccttgaggca ttgaagctgt atggtcgctc ttggcgtcag
      541 atacaagagc acattggcac aaagactgct gtccaaattc ggagccatgc ccagaagttt
      601 ttctcaaagg tggtgcgtga gcccggttcc aataatgcga ttgagatccc tccacctagg
      661 ccaaagagaa aaccacttca tccgtaccct cgaaagtgtg cgaattctgg atcggacgca
      721 aatccagcaa cagcgcaatt gaagcttgct cctggctcat cttcatctgg ctctgatcaa
      781 gagaatggtt ctcctatatc ggtgctatct gcgatgcagt cagatgcttt tggatcgtca
      841 gtatccaatc catcaaccag atgtacctcc ccagcgtcat ctgacgatgg aaataacatt
      901 cccacattca cgagtgggga agataataat gtgccttgtg aaccaacagt gatagatccg
      961 tcccagtccc acaaggaaat agaccaagat agaaaagacg tgaataatat gtctgaagag
     1021 gattcttcag aagaagaggt gcaagaaaca agcttgaagc tatttgggag gacagttgtc
     1081 atcccagatc caaggaagag aagctcctca gatccgaagc atgaaagtga ggagcagata
     1141 tcacagcctt ccaatgaaga aatgttgcag gcttcttcat cggttgggga gattccagcg
     1201 gcatattgtg caccaaatgg ttggtttatg tcatacaatt ctttcccatt ccaattcggt
     1261 gaatcagcgg cagatgctag aattccccct ttacacgtgt ggtggcctta ctacggtttt
     1321 gctcccatta gccatcctag aggactaagc acagtgatgc agcagactga aggtagtgac
     1381 gagagtgacg gtgtgaagag ccactcatcc gaatcaagtt cggactccgg ggaaaatgtg
     1441 cagatgaccg ctccccagag ctcgagaata gtggaatcac ttggagcgat ttacgtccga
     1501 gactcaggtt caagttttga gctaaaaccg agcgcaaatt cagcgtttgt aagagtgaag
     1561 ccaagcaaca gcggagatga aggggtaata aggggatttg tgccttataa aagatgcaaa
     1621 tttcaataac gcaggcaagc gggtattttc ttgaaagctg ctaatttaac agagaagagt
     1681 aggagcacga acgttgcttg catcactgta tttttttttg tttgtttgcg gggattggtg
     1741 gtgcattaat gaattgtttg ctgcttgcac cttaaaaagg atagagatgg tgtaagcagt
     1801 ttgttgctgt aagaatgtta catgtagact agtacttaaa attatagggg atgccaatct
     1861 ctgccctgat gatgttgtaa aagcagtacg caccatgttt tacctctggt tgaaagctaa
     1921 gctgttaatg gaaattgatc tc
//