LOCUS AK111536 2511 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J013031I11, full insert
sequence.
ACCESSION AK111536
VERSION AK111536.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2511)
AUTHORS Kikuchi,S.
TITLE Direct Submission
JOURNAL Submitted (12-SEP-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakahama,Y., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J.,
Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K.,
Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H.,
Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K.,
Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T.,
Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y.,
Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y.,
Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M.,
Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Rice full-length cDNA
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 32K full-length cDNA clones from
japonica rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S.,
Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N.,
Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Yamamoto,M. and Nakahama,Y.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M.,
Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M.,
Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J.,
Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y.,
Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A.,
Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences
Center and Genome Science Laboratory in Riken: Adachi,J.,
Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S.,
Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K.,
Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J.,
Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T.,
Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S.,
Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M.,
Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2511
/clone="J013031I11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2511
/db_xref="Osa1:LOC_Os11g39370"
/db_xref="RAP-DB:Os11g0607200"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) BRASSINOSTEROID
INSENSITIVE 1-associated receptor kinase 1 precursor,
putative, expressed"
/note="mapping to R11-TIGRv4S1-000696R (Chr.11: short
arm=22929908, long arm=22935400, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 779 a 493 c 560 g 679 t
ORIGIN
1 gaggtcgtct tcttcctcca atctctcgta cgaaagaaga aagtttttag gaagctagga
61 gcagcacaca gtccttctcc ctctcttctt gctatttagt gcagacctca aatccaaagt
121 gcttctattt tccatcaaga aagcaaacac agtgtattca agagtgcttc tgttcctgaa
181 aattaaacaa attgataata attttcaagg aagtatgaaa ctaatagctt ttgggctgtt
241 attactgggg tatatacaat attttgctac acctgattcc gaagtcatag cattgtatga
301 aataaggaca atgctcaatg acagtcgcgg cgtactgaat ggctggaata ataatcaagt
361 tagtccctgc tattttcctt ccatcagttg taatcaagat caaaaggtca tttcaataac
421 tttgagctca tcaggattat ctggattctt gtcacccagc attggaaagc tactatattt
481 acaacagcta ttattgaatg ataacaacat aaccggagga attccacaag agttagggaa
541 cctatcaagc ttaacaacac taaaacttgg aggaaatagc ttaaatggtt caatacctga
601 ctctcttggc cgtctttcaa aactccaaaa tctggacatg agcaaaaatc tcttaatcgg
661 gaatattcca acttctttgt ctaatctctc atcattgaat gatatcaatc tagcagacaa
721 caatctgagc ggtgaaatac ccaaacggtt gcttcaggtg tctcactaca gttatatagg
781 taaccatttg aattgtggcc aacacttgat ttcttgtgaa ggaaacaata taaatacagg
841 tggatcaaat aactccaaac tcaaggtggt tgcaagcatt ggtggagcat taactctcct
901 tgttatcata gtactatttc tgttatggtg gcaaagaatg cgccaccgac ctgaaatata
961 cgttgatgtt ccaggtcaac atgatcacaa tctagagttt ggacagataa agcggttctc
1021 attgcgagaa ctccaaattg caaccaacaa tttcagcgag caaaatgttc ttggcaaggg
1081 tggttttggt aaggtgtaca aaggagtgct ttcaggtcca catggcagaa aggttgcagt
1141 taaaagactg tttgaagtgg aaaaacctga aggggaaata gctttcctga gagaagttga
1201 attgataagc attgctgtgc acaagaacat attaagattg ataggattct gcacgactac
1261 aaaagagcga ctcttggtct acccttacat ggagaatctt agtgttgctt cccgtttgag
1321 agatatcaaa ctaaatgaac cagcattaga ttggccaaca agagtgcgaa ttgcccttgg
1381 cgctgcccgt ggcttggaat accttcatga gcactgcaac cccaagatta tccaccgcga
1441 tgtcaaggca gccaatgtcc tgcttgatgg aaactttgaa gcagtggtag gagactttgg
1501 gttggcgaag atgatagaca gagagaggaa tacagttacg accggggttc gcgggacaat
1561 gggccatata gctcctgagt acctgaagac aggaaggcca tcagtgaaga cagacatatt
1621 tggatatggt gtaatgttgt tagaaatagt gacaggagag cgtgcagtgt tccctgaatt
1681 ctcggaagga gacagtgaga tcatgctcaa tgatcaagtg aaaaggttgg tgcaaggagg
1741 acgattgaca gacattgtgg accacaacct ggacactgca tacgatttgc aacagctgga
1801 gaagatgatc caaatagcac tcctctgcac tcatgtggag cctcatcttc gccctgctat
1861 gtcagaggtt gtgcagatgc tggaaggcaa tgttgtccca gcggagcaat gggaggagtg
1921 gcaggtggct gaacttgccc ggcggcatca gcatgagatg aaccaacagc gcaggctgtt
1981 cagcttcagt gaggagtctc tcaatatcca ggaagccatt cagctatcca gtggcagata
2041 actggaagat catacaattg tatcacatga gcttcacttg tttcccaaga aagggtgaag
2101 gagcgaggag tctctcaata tccaggaaga cattcagcta tccggtggca gataactgga
2161 agatcataca attgtatcac atgagcttca cttgtttccc aagaaagggt gaaaggagac
2221 aacagtactc actatagttg tggattgtta ggaatagcct agagtcctca cggtttgcat
2281 aagtaactgt atctaacctt tatgctgtga acacaatgtc gtgcagctac atctcgttca
2341 gacattcatg tgtatacata gacatagact acagactact atagattata ttctatagtg
2401 tttttgtgtt aatgtatact tggtaaaatg gtaaccctgt gaatagatct tgtacatgaa
2461 attttctaac gtataacata attcttaaaa aagactcaca aaattaagcc c
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