LOCUS AK111403 1493 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-182-E05, full insert
sequence.
ACCESSION AK111403
VERSION AK111403.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1493)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1493
/clone="002-182-E05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1493
/db_xref="Osa1:LOC_Os05g09480"
/db_xref="RAP-DB:Os05g0186900"
/note="(RAP Annotation release2) Conserved hypothetical
protein"
/note="(Rice Genome Annotation Project) OsIAA16 -
Auxin-responsive Aux/IAA gene family member, expressed"
/note="mapping to R05-TIGRv4S1-000253F (Chr.5: short
arm=5309339, long arm=5310833, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 298 a 384 c 416 g 395 t
ORIGIN
1 acacttcaca cttcttgttt gatcaatcac agagacagag agagagagat ggcttggaat
61 ggcaggtttg gagaggatgg agaggaagag aggagccttg agctcagcct tgccctccct
121 ggatacttct ccagctcagg tcaccacctc ccttgctctc ttcttgattc atcttgccct
181 caaagtttcc tgctttgttt gatcatatct gtgtgttttg tcctatgctt tacatttctg
241 gtggattttc atttctcagg tttgcagggg aacacgagca ctgctgctga tggagccaag
301 ggaaacgatg ggttcaaggc aaggtgatga aaattttctg gttttttttt gggagcagtc
361 tgtttgctcg caacaacatt tttctgacga atctgcagca aaaagatgct aaaatttgcc
421 cctaaattct ctgcgattcg cagcaggccg gcggctccgg tggtcgggtg gccgccggtg
481 cggtcgttcc ggcggaacct cgcctcgtcg tcgtcgtcgt cgaagccgcc gcgtggaggc
541 cgagacgccg ccgccgccgc cacgggaggc aaggtggccc ggttcgtcaa ggtgaacatg
601 gacggcgtcc cgatcggccg gaaggtcgac ctggcggcgc acggcggcta cggcgagctc
661 tccgccgccg tcgaccgtct cttccgcggc ctcctcgccg gtaaacccca ccacctcgac
721 attatatatc atcggagttt tctatctcga gctttctctt gatggtgttt gctcgcttgc
781 ttgctcgcgt tggcagctca aagggaccca accatggcca ccgccgccgc cgccgccgct
841 gccggcgaga gctgcacagg agaggaggag gcgatcgccg ggctcctcga cggcggcagc
901 ggcgagtaca cgctcgtcta cgaggacgac gagggcgacc agatgctcgt cggcgacgtg
961 ccatggaagt gagtccgaca cacacacaca ccatgaatga atctctcgtc ttctccaaag
1021 ctaatggcga cgaattcttg attgattgca gcatgttcat cgccgcggcg aggaggctgc
1081 gcgtgctcag gagctccgac ctgaacgcct ccacggtcag cgaaatttct ggttttctgc
1141 tcctttttct tgagaaattt gatcgattct gacccgtgat ttttgttctt gatcttgttt
1201 ttgcagatac gagcagggag caggaagagg gcagctgccg agtgatcttg atcttgtttt
1261 tttcatcgcc gggagcagag caggaagcat atctgcatag tgattatgat agctctctgt
1321 tttgttttta atccttttct cttcgcgttc ttggaagatt tttgtgtaca aaaatgcgca
1381 agaagcgtct ttttttgggg atcatgatgt tgtcgactac gactaggaca agatgtaatc
1441 gagaatggaa attgttagta ctattaatta ggatcaagtt catctgttct tgc
//