LOCUS AK110804 1195 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-171-E10, full insert
sequence.
ACCESSION AK110804
VERSION AK110804.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1195)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1195
/clone="002-171-E10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 8..1015
/db_xref="Osa1:LOC_Os10g02750"
/db_xref="RAP-DB:Os10g0116800"
/note="(RAP Annotation release2) Similar to Purple acid
phosphatase"
/note="(Rice Genome Annotation Project)
tartrate-resistant acid phosphatase type 5 precursor,
putative, expressed"
/note="mapping to R10-TIGRv4S1-000019F (Chr.10: short
arm=1067093, long arm=1069131, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG99043.1"
/translation="MAVALALLAAMSALSSCTSPATAELTRHEHPVAAGAPLRLLVVG
DWGRKGGYNQTRVAEQMGKVAEETEIDFVVSTGDNFLENGLAGVDDMAFHDSFMDVYT
AQSLHKPWYLVLGNHDYRGNVLAQIDPALRKIDSRFICMRSFIVSAGIVDFFFVDTTP
FQLQYWTDPGEDHYDWRGVAPRDAYIANLLEDVDAAMKKSTATWKIAVGHHTMRSVSA
HGDTQELLELLLPVLKENGVDFYINGHDHCLEHISSRNSPIQYFTSGGGSKAWRGIFQ
QNEDKLQFFYDGQGFLSLELSENRARFAFYDVFGEALYHWSFSKANLQKVQSSASVTE
E"
BASE COUNT 298 a 302 c 317 g 278 t
ORIGIN
1 atcagccatg gctgttgcac tcgcgctctt ggctgccatg tcggcgctct cgtcgtgcac
61 aagtccggcc accgcagagc tcacacggca cgagcacccg gtggccgccg gcgcgccgct
121 gcgcctcctc gtcgtcggcg actggggccg gaagggcggc tacaaccaga caagagttgc
181 agaacagatg gggaaggttg cggaggagac ggagatcgac ttcgtcgtgt caaccggcga
241 caacttcttg gagaacggcc tcgccggcgt cgacgacatg gcgttccatg actccttcat
301 ggatgtctac acggctcaga gcttgcacaa gccatggtac cttgttcttg gaaaccatga
361 ctacagggga aatgtgctag cacagattga cccagctctg aggaagatcg acagcaggtt
421 catctgcatg agatccttca ttgtcagtgc aggaattgtc gatttcttct ttgtcgacac
481 gaccccgttt cagctccagt actggactga tcctggagaa gatcactatg actggagggg
541 agtcgcgcct cgggatgcgt acatcgccaa tctcctcgag gatgttgatg ctgcaatgaa
601 gaaatcaact gcaacatgga agatagctgt aggacatcat accatgagga gtgtgagtgc
661 ccatggagac acccaggagc tccttgagct tctccttcct gtcctcaagg aaaacggtgt
721 cgatttctac atcaatgggc atgatcactg cctggagcac atcagcagca gaaacagtcc
781 aattcagtac ttcactagtg gaggcggatc aaaggcatgg agaggcattt ttcaacaaaa
841 cgaagacaag ctccagttct tctatgatgg acaagggttc ctgtcacttg agctcagtga
901 gaaccgagct cgattcgcct tctacgacgt tttcggtgaa gctttgtacc actggagctt
961 cagcaaagct aatctgcaga aggttcagtc ctctgctagt gtaactgaag aatgagagaa
1021 gctggagcct tcagaataca ttcccacaca gctgagtaga tgtctacctg cataattcta
1081 cttgtacaat tatgtcacat tgtgctcatc aatactggat ttgctatgaa ttagcaagtg
1141 tttgattcta ctagagaaag atcacagaat gaagcaggtg tttttgcacg aagcc
//