LOCUS AK110748 1218 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-170-G04, full insert
sequence.
ACCESSION AK110748
VERSION AK110748.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1218)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1218
/clone="002-170-G04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 188..1012
/db_xref="Osa1:LOC_Os11g01450"
/db_xref="RAP-DB:Os11g0105800"
/note="(RAP Annotation release2) Phosphatidate
cytidylyltransferase family protein"
/note="(Rice Genome Annotation Project) phytol kinase 2,
chloroplast precursor, putative, expressed"
/note="mapping to R11-TIGRv4S1-000011R (Chr.11: short
arm=261624, long arm=263495, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAG99032.1"
/translation="MWILESPLLRDAGAAVLTGATALAVLRFWEEVGNRALLDQKLCR
KLVHITVGLVYFLMWPLFSADDVYAPFLASLVIAFNIIKVTLIGLGIVKDDGVINSMT
RNGDRRELLKGPLYYACAITLATVIFWRTSPISIAVICNLCAGDGVADIAGRRFGHVK
LPYNPDKSYAGSIAMFLAGFLASILYMCYFHLFGFVEESWSMVIAFGVTSLAAAIVES
LPISTRLDDNLTVPLASVLVGVLVFYYTGARNLCCMSADSSDISALVQNQMVLDRF"
BASE COUNT 301 a 286 c 287 g 344 t
ORIGIN
1 ttgaagaaat tagagtgctc aaagcaagcc atcgctctgg atacattagc atgggataac
61 atcataggat tccggtccta ttgtgttggc cttcgggatc ggaaataatc caaggtcagc
121 cacaccctta atacatacag tatgtaaaat ctgagtttgt ggccgctccg ctagcaaggc
181 ctcatccatg tggattctgg agagcccgct gctccgggac gccggcgccg ccgtgctcac
241 cggagccacc gccctcgccg tgcttcgttt ctgggaagag gtcggcaacc gcgccctctt
301 ggaccagaaa ctctgcagga aactcgtgca tattactgtt ggcttagtat acttccttat
361 gtggcctttg ttcagtgcgg atgatgtcta tgctccattt cttgcttccc ttgtcattgc
421 attcaacatc ataaaggtta ccttgattgg acttggtatt gtcaaagatg atggcgtcat
481 taactccatg accaggaacg gagaccgcag agagcttctt aaaggtccac tgtactacgc
541 ttgtgctata acactcgcta ctgtaatttt ctggaggaca tctcccattt caatcgcagt
601 gatttgcaac ttgtgtgccg gagatggtgt agctgacata gctggaaggc gattcggaca
661 tgtaaagctt ccttacaacc ctgataagtc ttatgctgga tccattgcaa tgttcttagc
721 tggtttcctt gcatcaatcc tgtacatgtg ctacttccac ctctttggat ttgtcgagga
781 gagctggagc atggtgatcg cctttggtgt gacatcgctt gctgctgcaa ttgtggagtc
841 actccctatc agcacacgcc tggacgacaa tctgactgtg ccactcgcct ctgtcctcgt
901 tggtgtcctt gttttctatt atactggggc cagaaacctg tgttgtatga gcgctgacag
961 cagtgacatt tctgcacttg tgcagaatca gatggtcttg gacaggttct agtgactact
1021 gactagtaag tagctgccct gcagagctga aaagaaactg atttactaat atcagatttg
1081 attaatgtaa caaggatcga tacaagctac aagcatcata gttgtatctt gtaatcaaga
1141 aaaacaaaag ctatctgata tactagtaag gcaaaagttg agtagaggaa aaacatacca
1201 gagagctgtc tacactcc
//