LOCUS AK109954 3092 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-159-A10, full insert
sequence.
ACCESSION AK109954
VERSION AK109954.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3092)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3092
/clone="002-159-A10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..3092
/db_xref="Osa1:LOC_Os08g01830"
/db_xref="RAP-DB:Os08g0109800"
/note="(RAP Annotation release2) Regulator of chromosome
condensation/beta-lactamase-inhibitor protein II domain
containing protein"
/note="(Rice Genome Annotation Project) receptor protein
kinase CRINKLY4 precursor, putative, expressed"
/note="mapping to R08-TIGRv4S1-000028F (Chr.8: short
arm=490581, long arm=493672, direction=forward) for TIGR
Pseudomol ver4"
BASE COUNT 504 a 977 c 1019 g 592 t
ORIGIN
1 attttcttcc atttccaaag ccaagaaaga aagggaggag taagtctccc ccatgtcgtc
61 ttctcctcgc tcccaatgcc aatgtctcgc catggcgccc ttgctctgac cacctccttc
121 ctcctcgcgg ccgtcgccgt cttccttccc gggcacgcgg cggcgcggca gttctccacc
181 gtcgccatct ccaactcccc cgacgcgacg gtcgtgtgcg cgctcgtccg ccccaaggac
241 gtgcccgatg atgtccccgg cgccaagctg cggtgcacct ccatgcccac cggcgaggtc
301 atgtcctacc cctccgcgga cgtcccctac aacgccatcg ccgccggcac cgacttcctg
361 tgcggcctca tggcgcccaa cggcggccac gccgccatgc gctggtggtc cttctccgac
421 gaggccgccg ccaaccgctc ccgccccgtc ggccgccgcc tctactgggg cccttccctc
481 cgcgccctct ccgccggtgg ccctcacgtc tgcggcctct ccgacgccca cgacccgacg
541 tgctgggagt ggccggggtt gagcttgccc aagggcctcg acttctcccg catcgccctc
601 ggccgcgact tcctctgcgg cgtcgtcaag ggcaacgcct ccgccatgac ctgcttcggc
661 ggcggcatgg cgccgcccgc gttcgccggg gctgcttcca tcgtggcggt cgccgccggc
721 caccgccacg cctgcgccgt cgacgacgac ggcggcatgt cgtgctgggg cgaagggtac
781 ccggacatgc gccccggcga cctccccgcc gacatgaagt ccatggcgct ggggcggaac
841 acgacgtgca tcctcgacgg cgacgacatg gtgcggtgct ggggcgtgga ggtgcccgag
901 gagtacaggc gcgcgtcgtt cgtgtccatc gaggccgacg gcgacaccgt ctgcggcgtc
961 ctcaccacca acttctccgt cgtgtgctgg ggcaacgaga ggttccatgg gaggcacctc
1021 atcttcaacg acaccatgcc cggcgcgtgc gccaccgtcg gcaactgctc ctccagctgc
1081 ggcttcgtcc ccggctccgc cgcgctctgc ggcaacggcg gcggcgaggg cggcgagcag
1141 ctcgtcgtgt gccagccctg caagctgccg ctcaacgcgt ccaggctcgt cgtcgggaat
1201 gggaccagca agaatgcggc ggcgccgact gattccggga agaacaggaa ggccgtcaag
1261 gtcgcggtca ccgcggcctg cgtcggcgtc gcggcgcccg tggtggctgg gctggtgttg
1321 tacctcgccg tcgtgaggaa gcgtggcggg aagaagaacg ccaccgtgca gctcggcgag
1381 tcgtcgacgc tgaccctctg ccgcgacttg gagggggccg tgatcatgcc ggcgccggag
1441 gcatcgccgc cgccgccgcc gctcgggtgc gaagagttca cggtgaagga gctctcgcgg
1501 ctgacggacg ggttcgccga ggagaggaag atcgggagcg gcagcttcgg gtcggtgtat
1561 cgcgcgaagc tccccgacgg gcgcgaggtc gccatcaagc gcgcggagcg tccgcgcgcg
1621 gcgtcgggcg gcgggcgtcg ccggcgccgc cggtacgacg cggagcgcgc gttccgggcg
1681 gagctccggc tgctgtcccg cgcgaaccac cgcaacctgg tgcagctgct gggcttctgc
1741 gaggagcgcg gcgagcgcat cctggtgttc gagttcatgc cgcacggcgc gctgcacgac
1801 cacctccacg gccgcgtcga cggccactcc ccgctgttcg cgtcgtggga ggcgcggctc
1861 cgggtggcgc tcgacgcggc gcgcggcgtc gagtacctgc attgctacgc cgtgccgccg
1921 atcatccacc gcgacatcaa gccgtccagc atcctcctcg acggcgagtg gaccgccaag
1981 gtgtcggact tcgggctgtc gctggcatca tcatcgtcgt cgtcggcgac cgcgacacca
2041 ccggcggcgt gctcgacgtc gtcgacggcg gggacggtgg ggtacatcga cccggagtac
2101 taccggctgc aggagctgac gcagcggagc gacgtgtaca gcttcggcgt ggtgctcctc
2161 gagctggtga ccgggaggaa ggcgatccac cggcaggagg gcgggagcgg gtcgccgcgg
2221 aacgtgatcg agttcgccgt gccggcggtg gaggcgggcg gcgtcgggag gatcatggac
2281 gggcgcgtgc cggcgccgcg cgggaacgag gcggaggcgg tgtcgcgcgt ggcgaggatc
2341 gcgagcgagt gcgtgcggcc gcgggggcgc gcgcggccgg tgatgtcgga ggtggtcgcc
2401 gagctggagt gggcggtcac gctctgcgag gagtccgtag accggagctc cgccgccgcc
2461 cagcagcaga acagctcgcg gcacggcggc tccgacgtgt cgcggtcgga gtccgacgac
2521 cccagcccct tccacacgag ggagttcgcc ggcgtcggac atggcaggtc aaactcagca
2581 atgtaaaaaa aaaaacaaac gagttttatt tttttatcct ttttttattt attttctttg
2641 ttttgtttta attagtttcc acggttgctg gaataggatg aattagttgc tgtgcataaa
2701 catttttcaa agaggaaaaa aaagatactg agagggagta ttcattttga tgttgattgt
2761 tacttgaatt agtctaggag agtttttgat tgcttttgct ctgtgaacaa aattcataag
2821 agtttgacaa aatctaacat gtacgttgta tatcaagatt tattgacaca acataataat
2881 ataataataa tactagttgg agtagtgggt ggtttgtaag tacaatcttg ttttttcttc
2941 tgttttgatt tgttagctta gaaattttcg gagggttggt aggttagatt agacaaaatt
3001 attaatttgt ggccttgtga gagtgtggag atgcaacaac tgtacttctt ccaacaaact
3061 gcttttatta tataatgtaa tacttggagt gc
//