LOCUS AK109939 1174 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert
sequence.
ACCESSION AK109939
VERSION AK109939.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1174)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1174
/clone="002-154-A12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 34..918
/db_xref="Osa1:LOC_Os11g05614"
/note="(Rice Genome Annotation Project) NAC
domain-containing protein 90, putative, expressed"
/note="mapping to R11-TIGRv4S1-000140F (Chr.11: short
arm=2546575, long arm=2547833, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98964.1"
/translation="MATTRSGVGGAISDPFATPGFRFYPTEEELLGFYLRHRLAGTRP
DVERVIPVVDVYGYHPSQLAALAGEASARDTEQWFFFCPRAERELHGGRPARTTPSGY
WKATGSPSCVISSATNRVIGVKRTMVFYQGRAPTGTKTRWKMNEYKAVADDADAAAAA
MLHPMAPPRLRNELGVCRVYISTGTLRSFDRRPLDNQAAAPTQQQVMPSLTAAAAVNT
NLCGGGGGVVFAGAQGDSSRDCSSSSGSRELAGGADGSEDDAIDWNSLISSATADDLG
FNTVVGFDPSIVGSWPQV"
BASE COUNT 247 a 361 c 344 g 222 t
ORIGIN
1 acagctacct cactccaaca atcgccgacc acgatggcca ccacgaggag cggcgtcggc
61 ggcgccatca gcgacccatt tgcgacgccg gggttccgct tctacccgac ggaggaggag
121 cttctcggct tctacctccg ccaccgcctc gccggcacga ggcccgacgt cgagcgcgtc
181 atccccgtcg tcgacgtcta cggctaccac ccgtcccagc tcgccgccct ggccggggag
241 gcgagcgcgc gcgacacgga gcagtggttc ttcttctgcc cgcgcgccga gcgggagctc
301 cacggcggcc ggccggcgcg caccacgccg tcggggtact ggaaggccac gggatccccg
361 tcctgcgtca tctcctccgc cacaaacagg gtcatcggcg tcaagcgcac catggtgttc
421 taccagggcc gcgcccccac cggcaccaag acccgctgga agatgaacga gtacaaggcc
481 gtcgccgacg acgccgacgc cgccgccgcc gccatgctcc acccaatggc gcctcccagg
541 ctgaggaacg agctgggagt gtgccgggtg tacatcagca cgggcacgct gagatcgttc
601 gaccgccggc cgctcgataa tcaagcggcg gcgcccaccc agcaacaggt gatgccatct
661 ttgacggcgg cggcggcggt gaacacgaac ctctgcggcg gcggcggcgg cgtcgtgttc
721 gccggtgcac aaggagacag ctcccgcgac tgcagctcgt cgtcggggtc gcgagaactc
781 gccggcggcg ccgatgggtc tgaagacgac gccatcgact ggaactcgct catcagtagc
841 gccactgctg atgatctcgg cttcaacacc gtcgttggtt ttgatcctag catcgtcgga
901 tcatggccac aagtctagtg cttgattacg cgtaatataa aattaatcga gtttagtgat
961 cagttagttt tttgtttttt tgcaagaagt tcaaaaatta ttgctgtgtg ttttgcactg
1021 agtagcaaag atgggaggat tagaagatga atcgattagt ttgcaaatca ggtgaattaa
1081 ttagagtaat taacatctgt agtaatagta agtagaaaat caaaatgaga agttgtagca
1141 gaaagtatat actaccacaa atccgttctt agtc
//