LOCUS AK109812 1803 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-147-H02, full insert
sequence.
ACCESSION AK109812
VERSION AK109812.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1803)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1803
/clone="002-147-H02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1803
/db_xref="Osa1:LOC_Os08g06380"
/note="(Rice Genome Annotation Project) CSLF6 - cellulose
synthase-like family F; beta1,3;1,4 glucan synthase,
expressed"
/note="mapping to R08-TIGRv4S1-000162R (Chr.8: short
arm=3540494, long arm=3542239, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 427 a 519 c 424 g 433 t
ORIGIN
1 aaaaaaaaac agagagcaac gaatctaggg gagcaccacc actagcgtgg gccccacggt
61 ggctggctgg cgctttcaag gcctaggggg tggtaggtgg ggcccactga cagccgcatg
121 tcggtgcccc cgctgcgcag cgaggccgtg agcgccgcgc cagctcacgc gtcatttgac
181 tgccagctgt ctcccccctc cccgtcacat gattggctcc tcccccctac ctttaatttt
241 atttttcttt tttctttttt gacatccata attaagaatt ttcaaatggt aaaataaata
301 taatagcgct agtttgaact tgaatataaa tataaaagtg gcaacaattt tctcctcctc
361 tcccatgcag taatcgagct gtgcctaaca tggtccatgt tcccccaatt attgcgcctc
421 ctccatcgtg cccgtgcatg cactaccccc caatcattat tactcgtctt cattagccac
481 acattacctg tccaaccagg cacaagcaaa atataattaa ctactaatta attactactt
541 gctaattaac agcaagtgat gtggttaatg taataactgg atggtaattg gatgctgcag
601 ggtgctgatc tttgtgaggc tgatcgcgtt cacactgttc gtgatatggc gtatcgagca
661 caagaacccg gacgcgatgt ggctgtgggt gacgtcgatc gccggcgagt tctggttcgg
721 gttctcgtgg ctgctcgacc agctccccaa gctgaacccg atcaaccgcg tccccgacct
781 cgccgtcctc cgccgccgct tcgaccacgc cgacgggacc tcctccctcc cggggctgga
841 catcttcgtc accaccgccg acccgatcaa ggagcccatc ctgtcgacgg cgaactccat
901 cctctccatc ctcgccgccg actaccccgt cgaccgcaac acctgctacc tctccgacga
961 ctctgggatg ctcctcacct acgaggccat ggcggaggcg gccaagttcg cgacgctgtg
1021 ggtgcccttc tgccggaagc acgccatcga gccgcgcggg cctgagagct acttcgagct
1081 caagtcccac ccctacatgg ggagggcgca ggaggagttc gtcaacgacc gccgccgcgt
1141 ccgcaaggag tacgacgact tcaaggccag gatcaacggc ctcgagcacg acatcaagca
1201 gaggtccgac tcctacaacg ccgccgccgg cgtcaaggac ggcgagcccc gcgccacctg
1261 gatggccgac gggtcgcagt gggagggcac ctggatcgag cagtcggaga accaccgcaa
1321 gggcgaccac gccggcatcg tcctggtcag tataattaaa agttaattaa ttattactct
1381 tatagtacaa atcttttgtt tatgtgatta tttggttagt tagtgatgac ttgtcagggc
1441 gaatattatt ttggattggg agatatgtgt gggattttga tggaattgac gtggtgatag
1501 tcaagagcgc aaccaccacg cactaattgc acattagtag tcgtagcagc atgcaggata
1561 atgactcact tgtgtctgaa caagctagtg gttggggtgg tcctttccac ccagacagca
1621 ccaccacatc accattaatc cacacccccc taattaatct cacctcctct caccattaac
1681 taaccaccat ttcttaatta ctgctacaag tacaagttaa ttaattaatt accacaatat
1741 aattattagt attattatta ttgatttgtg tcaaggaaaa taagatcttg atcatgttcg
1801 agc
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