LOCUS AK109788 2846 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-147-D03, full insert sequence. ACCESSION AK109788 VERSION AK109788.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2846) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2846 /clone="002-147-D03" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2846 /db_xref="Osa1:LOC_Os04g35890" /db_xref="RAP-DB:Os04g0439600" /note="(RAP Annotation release2) Regulator of chromosome condensation/beta-lactamase-inhibitor protein II domain containing protein" /note="(Rice Genome Annotation Project) protein kinase, putative, expressed" /note="mapping to R04-TIGRv4S1-000511R (Chr.4: short arm=21691556, long arm=21694400, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 376 a 939 c 1011 g 520 t ORIGIN 1 attttcccct tctccatctt cttcctcctc ctccccaact cgcgccaaca atggtcgtct 61 ccacaaactc ctcctcctcc tcctctcctc caacccaatg tctccacctc acctcctcct 121 cctcctccta gccctcctcc tctcgccgcc cctcctcctc gcctcctcct ccttccccct 181 ccccaccatc gccatcgccg ccgtctccaa ctccagctcc aacccctcca agcagcatct 241 cgcgtgcggg ctcgtgccgg cggcgggggg cgcggcggcg gggtacagga tctcgtgcgc 301 cagcgtgtcg aacaggtcgg cggcggcgcc gcacgtgtac gcgtatggcg gggacgggac 361 gtgctcgccg tactcggcgg tggtcgccgg ggacgggtac ctgtgctcgg ctgcgccgac 421 gtcgtcgccg ccaatgtcga tgcggtggtg ggatctgaac gaggccgggg atgcgtcgaa 481 gcgggtgtac agggggcggg tgctctcggc ggtgtccggc ggcggggagt ccgtgtgcgg 541 gctcgtcggg gagaggatgc agtgctggag gtgcccgtgg ggggagggcg cgccggcgag 601 ggtggggttc tcggcggtgg cggtgggtgg cgggttcgtg tgcgggttgg tggtggggag 661 cggggaggtg aggtgctatg gtggagggga ggtggtgggg agggagcccg cggggaggag 721 gttcatgctg ctcgccgccg gcgagaggca cgcgtgcggc gtggatgatg gcggggtggt 781 gggttgctgg ggggaggcgg cggcggtggc ggccgcgtcg ccgccgagga tcagccgcgc 841 ggtgtcgacg gtggcggtgg gcgacgcggt cacgtgcgtg ctgtggggga actggacggt 901 ctcgtgctgg cccgaggggg aggcgtcgcc gccgccggcg ctggcggggc agcagttcgt 961 cgcgctggag gcgaagggga aggtggtgtg cggggtgctc atgtccgact actcgctgca 1021 gtgctggggc gcaggcgtcg cgggcggggt gaggaaggtg ttcgacaagg tgctcccggg 1081 tccgtgcgcg ccgtcgaagt cgtgctcgtg cggcgtctgg tcgggctccg cgcagctctg 1141 cgccggcagc ggcgggggag gcggcggaga cgtgtccgtt tgttacccct gcggctacac 1201 ccctcctccg atggcgctgt ccccgacgtc caactcgtcg tcgtcgtcga gctctcaatc 1261 gaaggggaag cgtcgcccga gcaatctggc gatagcgttg atcagcgccg gagctggatc 1321 ggcgctcgtg gcgctcctcg ccgcgctcgc ggcggtttac tacctgcgcc ggcaccgtgg 1381 cagcagctcg ccggtctccg ggcgcatcca cgccgagccg acgggcacgg cgccgcgcgt 1441 ggagcggcgg ctcagcgcgc tgctctccaa gggcccgaac acgacggtcg agcagttccc 1501 gctggtggcg ctccgcgccg ccaccgactg cttctcgccg gcgaagcgca tcggctccgg 1561 cagcttcggc gcggtgtacc gcgcgtccct ccccgacggc cgcgaggtcg ccatcaagcg 1621 cgccgagcgc cgcgacacgg ggggcccttc ctcctcctcc gccgccgcgg cgcggcgcgt 1681 cgaccacgag gcggcattcg tctccgagct cgcgctcctc tcccgcgtca accacaagaa 1741 cctggtccgc ctcctcggct tctgcgccga cggcggcgag cgcatcctcg tctacgagtt 1801 catgcccaac ggcaccctcc acgaccacct ccacaggcgt gcggcgtcgg cggcggcgcc 1861 gctctccccg ccgctcgcct cctggccgtc ccgcctccgc ctcgcgctcg gcgccgcccg 1921 cggcatcgag tacatgcaca cctacgccgt cccgcccatc atccaccgcg acatcaagtc 1981 ctccaacatc ctcctcgact cctgctggac cgccaaggtc tccgacttcg gcctctccct 2041 cctcaacacc ctggacggtg acaatgccgc cgccggcgac ggaggcaatg ccggcgacgg 2101 agacgacgag gagcggtgcg tgacggcggg gacggtgggg tacatggacc cggagtacta 2161 caggctgcag cacctgacgg acaagagcga cgtgtacagc ttcggcgtcg tgctgctgga 2221 gctgctgtcc gggtgcaagg caatccagaa gtacgagggc agcggctcgc ccaagaacgt 2281 ggtggacatg gccgtgccgc acatcgaggg cgaccgggtg caccgggtgc tcgacgcgag 2341 gctgccgctg ccgacgccgt gggagatgga ggccgtcgcc tacgtcggct acctggcggc 2401 cgactgcgtc aggctggccg gccgcgaccg ccccaccatg agcgaggtcg tgggcgtgct 2461 cgagcgggcc gtggcggcgt gcgacgagta cgaggaaggc ggcgccggcg ccggcggcga 2521 gcccgcgctg tcgcggtcgt gcaccgatgg gtccacggcg acgtgacgtg gcatgtcgtg 2581 gaatggaatg cccccatttg catggttggc ctcccttgcg caagaacaac ggggaggaga 2641 gttttctttt gaggattttt tgtttgtttt attgttattg cttagcatta gtcacagaac 2701 attcattagt attttataga aaagaatcaa aattttagtg taaatggtct tctgacattg 2761 ttttgatttg aaatattttt gggttttctc cccccttttt tgttcttttc tggtcttaat 2821 atacatatat tgaagtcttc ctcgac //