LOCUS AK109760 1898 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-146-G08, full insert
sequence.
ACCESSION AK109760
VERSION AK109760.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1898)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1898
/clone="002-146-G08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1898
/db_xref="Osa1:LOC_Os01g27170"
/db_xref="RAP-DB:Os01g0369300"
/note="(RAP Annotation release2) K+ potassium transporter
family protein"
/note="(Rice Genome Annotation Project) potassium
transporter 3, putative, expressed"
/note="mapping to R01-TIGRv4S1-000709R (Chr.1: short
arm=15480019, long arm=15484051, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 285 a 644 c 582 g 387 t
ORIGIN
1 acggcgaatc ggagaagaag cacgcagtga gagagagtgc gcatgtccgc aattggtgac
61 tccatcccgg ccatcttcct ccctctcctt tcatcttcca ataaaataaa atgccggtgg
121 ccgactgcga aagcggtctc tcgccggcag atgtcaccgg tgcaggtgcc gcaaacggga
181 acccgggtca ctggaggagc tactacaggc atgtgctgct gctggcgtac cagagctgcg
241 gcgtggtgta cggcgacctg agcacgtcgc cgctgtacgt gtacaagagc accttcatca
301 tcgggtcgct ccggcggttc caggacgagg agatcgtgtt cggcgtcttc tccctagtgt
361 tctggacgct gaccctcatc ccgctcctca agtacgtctt catcgtgctc gccgccgacg
421 acaacggcga gggcggcacg ttcgcgctct actcgctgct ggtgcgccac gccaagttca
481 gcctcatgcc aaaccaggag gccgccgacg aggagctcac ctcctactac cgccccggct
541 acgcccccca ggagaccccc atcctcaccg cgctccgtcg gttcctcgag aaccaccgca
601 agtcccgcac cttcctcctc gtcaccgtcc tcttcggcgc ctccctcgtc atcggcgacg
661 gcgtcctcac gccgcccatg tccgtgctgt cgtccttctc tgggctgcaa gtgcactcga
721 ccgcgctgac gagcggggag gtggagatcc tgtcgtgcac ggtgctggtg tgcctgttca
781 tggtgcagca ctggggcacg cacagggtgg cgttcctgtt cgcgccggtg gtcatcgtct
841 ggctcctcct cctcggggcg ctcggcgtct acaacatcgt ggtgtggaac cccagggtgc
901 tgcgcgccct ctccccttac tacctcgtca ggttcttcca gcacaccggc aaggacggct
961 ggatctccct cgggggaatt ctcctctcca tgacagggac cgaagccatg tgtgcggatc
1021 ttggccactt cacagctgca tccataaggg ttgcgttcgt ggggctcatc tacccgtgct
1081 tggtgctgca gtacatgggg caggcggcct tcctgtccaa atcaccccac tgcgacatcc
1141 acttcgtatt cttcgagtcc attccaacgg gcatcttctg gccggtgctg gtgatcgcga
1201 cgctggcggc gatcgtgggc agccaggcgg tgatatcggc gaccttctcc atcgtgcggc
1261 agtgcacggc gctgggctgc ttcccgcgcg tgaagatcgt gcacacgtcg cggcggatcc
1321 acgggcagat ctacagcccg gagatcaact ggatcctgat gctgctgtgc atcgccgtca
1381 ccatggggct ccgcgacacc accctcatcg gcaacgccta cgggatggcg tgcgcggggg
1441 tgatgctggt caccacgctg ctcatggcgc tcgtcatcgt cttcgtctgg cagtacagct
1501 gcctggtggc ggcgctcttc ctggtggcgt tcggcgtcgt cgaggcggtg tacctgtcgg
1561 cggcgctgat gaaggtgccc cagggcgggt ggctgccgct ggtgctgtcg ctggtgttcg
1621 tcgccgtcat gtacgtgtgg cactacggca cgcggcggaa gcaccagttc gacgtgcaga
1681 acaaggtgtc gctcaggtgg atccacgcgc tcggccccag cctgggcatc gtgcgcgtcc
1741 cggggatcgg catcatctac tccgagctgg ccaccggcgt gccggccatc ttctcgcact
1801 tcgtcaccaa cctgccggcg ttccaccagg tgctcgtctt catctgcgtc aaggccgtgc
1861 cggtgccgca cgtccgcgac gaggagcgcc acctcgtc
//