LOCUS AK109524 1966 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-115-F10, full insert
sequence.
ACCESSION AK109524
VERSION AK109524.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1966)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1966
/clone="002-115-F10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 29..412
/db_xref="Osa1:LOC_Os01g12020"
/db_xref="RAP-DB:Os01g0219500"
/note="(RAP Annotation release2) Plant lipid transfer
protein/Par allergen family protein"
/note="(Rice Genome Annotation Project) nonspecific
lipid-transfer protein precursor, putative, expressed"
/note="mapping to R01-TIGRv4S1-000351F (Chr.1: short
arm=6537809, long arm=6539878, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98788.1"
/translation="MHRSMASQAVAPLLLILMLAAAAGGASAAVQCGQVMQLMAPCMP
YLAGAPGMTPYGICCDSLGVLNRMAPAPADRVAVCNCVKDAAAGFPAVDFSRASALPA
ACGLSISFTIAPNMDCNQVTEELRI"
BASE COUNT 361 a 648 c 568 g 389 t
ORIGIN
1 agcaactccc ctcctccact agaccaccat gcacagatcg atggcctctc aggcggtggc
61 gcccctcctc ctcatcctca tgctcgcggc ggcggcgggg ggcgcgtcgg cggcggtgca
121 gtgcgggcag gtgatgcagc tgatggcgcc gtgcatgccg tacctcgccg gcgcccccgg
181 gatgacgccc tacggcatct gctgcgacag cctcggcgtg ctcaaccgga tggccccggc
241 ccccgccgac cgcgtcgccg tctgcaactg cgtcaaggac gccgccgccg gcttccccgc
301 cgtcgacttc tcccgcgcct ccgccctccc cgccgcctgc ggcctctcca tcagcttcac
361 catcgccccc aacatggact gcaaccaggt tacagaggaa ctgagaatct gagagcgtga
421 ggaatcgagt tcatgttgca tttatcatca atcatcatcg actagatcaa taaatcgagc
481 aaagctttga taaagagcga gccgccttaa ttaatttaca ataatcttgg atgtcatcct
541 gcatgcgtgt atgatcacac ggttgtttaa ttaggcactt taattttgca ctgtcgtgtg
601 ttacttattc ctgatctcta ctatacggtg actaacccct gatcaaaagt ttaattcaac
661 atgttttcga gtacttgcga tcctaattcc caaattcata tgctttgcaa tatcaaatga
721 tccatcgaga agaagaaact atatattatt ccaaaaacga taacccaaac gagctttgca
781 atatattatt cataatatgc tttgcaatat caaacgatcc atcttgaatc agcaatggtt
841 gttcgttgca cgtcccaatt tcagacgagc ttgtagccga tgacccagac gtcagccggc
901 ggcggcgcgg cgcggccgcg gacaacgtag gcgaaggcgg cgctctcgcc ggcggccagc
961 gacgacggga gcacgtagcc gtacctcgcc gccttctcga gcccccacac cgggccgtgc
1021 ggcttgccga tgccgatgtg gagctcctcg accgtcttgc cgccggccgg cgacctgttg
1081 ctcaccgtcg ccgcgtaccg gcggtacgcc ctcccgtcct tcttccacga cgccgtcgcg
1141 ttcagctgcg tgatctccac cggcgacgcc gcagctgcga gaggtggcag caaggtctgg
1201 ttgtccggcc tcttgatcgc tgcttcggcg agcccgccgc ggccgccgcc ggcgaggcga
1261 gcgaggacgc ccatgagcgg cgcgttgttg taggtggcca cctccgtctg ctggtagttg
1321 ttcctctcgt cggcgaagcc gtcgcgcccg tcggggccgc cgaccacggc gccgtcgagc
1381 aggttcgggt tgctgccggc gcggccgaac cagctcgcgt acccatcctt gcagctcacg
1441 aacgacgggt tggccctgat ggagacgatg gacgcgccgc ggtggtgcgc gcgccgcggg
1501 tacctcgcgc catagccgac catgtagcta atccccctcg ggttgctacc caggatgtag
1561 tccacctgcg acttggccag cgcgacgagc tccgacgccc gcgccgccgg cccggcctgg
1621 caccgcacga cggcttgccc gcggccggcg gcggcgaggt ggtcggcgta gacggccagc
1681 aggaacgacg cgccggtgac gaactggagg ttgttccagc cctggtggta catcaggccg
1741 ccgggcgtcc tcccgacgtt gccaccgccg ccgcccttgc cgaggcagga gcacgcgaag
1801 acgtcggcgt tccgctggta cctccgcagc acggcggcgt gcggcccggc cttcccttgc
1861 aggagaaact acatcaaaag gaatgtaagt ataagtacag tgttggggtg agtagtacta
1921 ctcttgtatc cgacaaaatg tggtaatcac tgtagcattt cagacc
//