LOCUS AK109487 1786 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-203-A05, full insert sequence. ACCESSION AK109487 VERSION AK109487.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1786) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1786 /clone="001-203-A05" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 57..1529 /db_xref="Osa1:LOC_Os01g16090" /note="(Rice Genome Annotation Project) RNA binding protein, putative, expressed" /note="mapping to R01-TIGRv4S1-000506R (Chr.1: short arm=9060829, long arm=9063540, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG98769.1" /translation="MGKKRKLDSKSPAAARSAAARAAAAAAAAAAAAAVAEPSSQPEA LAEDPAPSSQPLGLSSEGAGERMMSREAGGGEEEEVEEVEVEEEVEVDEDEDGEGEGE EEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAADADPALRKIFV HGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQ KKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSNVGA DIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEG VVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAHSHSLPGAAVGGHVMPSP VSSLTSLPGVAGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPNPGASAG LGSSGLPGMPGAGGYLGGYGGGGGYGSTPPGGPGRNYMGH" BASE COUNT 348 a 494 c 578 g 366 t ORIGIN 1 acagccgtcg aaaccctagc cccaaggttc ccccacgcct cgcgctcgcc gtcgccatgg 61 gcaagaagcg gaagctcgat tccaaatccc ccgccgccgc taggtccgca gccgccaggg 121 ccgcagcagc cgcagccgcc gccgccgccg ccgccgccgt cgccgagccc tcctcccagc 181 ccgaagccct agccgaggac ccggccccct cgtcgcagcc cctgggccta tccagcgagg 241 gcgcggggga gaggatgatg tcccgtgagg ctggcggtgg cgaggaagag gaggtggagg 301 aggtcgaggt ggaggaggag gtggaggtcg acgaggacga ggatggggag ggggaggggg 361 aggaggagga ggaggcggcg gagagggacg ccgactcgat ccaggcgctg ctgaattcgt 421 tccccaagga ccagctcgtt gagctgctca gcgccgcggc gctcagccac gaggacgtgc 481 tcacggccgt ccaccgcgcg gccgacgccg acccggcgct gcggaagatc ttcgtccacg 541 gcctcggctg ggacgccacc gcggagaccc tcaccgaggc gttcagcgcc tacggcgaga 601 tcgaggacct cagggtcgtc accgaccgcg ccacgggcaa gtgcaagggc tacggtttca 661 tcctcttcag ccgccggtcc ggcgcccgcg cggcgctccg tgagccccag aagaagattg 721 gcaaccgcac cacggcctgc cagctcgcct ctgttggtcc tgtgccgccg ggcggcatgg 781 ccactaaccc tgccccagcg gtagccccag ccccagcgca gctggcattg ccgccagtgt 841 cggagtacac gcagcggaaa atttttgtca gcaatgtcgg cgcagacata gacccgcaga 901 aactgctgca gttcttttca aagtatggtg agattgagga gggtcctctt gggctcgata 961 aggttaccgg gaagccgaag ggctttgctc tatttgtcta caagaccctc gatagtgcta 1021 agaaagcgct tcaggagcca cacaagcaat tcgagggggt tgtgctgcac tgccagaagg 1081 caattgatgg accaaagccc aacaaaggtg gaggacttgg gggtttgtat ggtgctggca 1141 cttcaggcgg gaggaaaggc gctggtggtt atggagctca tagtcattct ttgcctggtg 1201 ctgctgttgg gggccatgtg atgccatctc cagtatccag tttgacttca ttgccaggtg 1261 tagctggtgg cccaggggtg aatcctgctc tggggcaggc cttgacagct atccttgcct 1321 cccagggtgg agggttgggt ctgaacaaca tcctgggagt tggtgcaaat ggttcagggt 1381 tgcctaaccc aggggcttct gcaggactgg gtagtagtgg tttgcctggg atgcctggtg 1441 ctggtggtta tttgggcggc tatgggggtg gtggtgggta tggcagtact ccaccaggag 1501 gcccaggaag aaattacatg ggtcattagg atgcttataa ctattttact gtggccagat 1561 gattctacgt gttcctgctt cgcacttata aacttgctgt tttaagctgt ttctggcaaa 1621 tcgattactc tagtggtcaa agttttcaca agaactttgt ttcctcaatc ctatctttca 1681 aaattaagca gtatgtacaa ctatttagat tttcgaatgg ccatcagggc ttgtgacctt 1741 attgtaaaag agcttgtgtg gatttaaaga accatggatc ttttct //