LOCUS       AK109487                1786 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-203-A05, full insert
            sequence.
ACCESSION   AK109487
VERSION     AK109487.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1786
                     /clone="001-203-A05"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             57..1529
                     /db_xref="Osa1:LOC_Os01g16090"
                     /note="(Rice Genome Annotation Project) RNA binding
                     protein, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-000506R (Chr.1: short
                     arm=9060829, long arm=9063540, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG98769.1"
                     /translation="MGKKRKLDSKSPAAARSAAARAAAAAAAAAAAAAVAEPSSQPEA
                     LAEDPAPSSQPLGLSSEGAGERMMSREAGGGEEEEVEEVEVEEEVEVDEDEDGEGEGE
                     EEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAADADPALRKIFV
                     HGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYGFILFSRRSGARAALREPQ
                     KKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSNVGA
                     DIDPQKLLQFFSKYGEIEEGPLGLDKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEG
                     VVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAHSHSLPGAAVGGHVMPSP
                     VSSLTSLPGVAGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPNPGASAG
                     LGSSGLPGMPGAGGYLGGYGGGGGYGSTPPGGPGRNYMGH"
BASE COUNT          348 a          494 c          578 g          366 t
ORIGIN      
        1 acagccgtcg aaaccctagc cccaaggttc ccccacgcct cgcgctcgcc gtcgccatgg
       61 gcaagaagcg gaagctcgat tccaaatccc ccgccgccgc taggtccgca gccgccaggg
      121 ccgcagcagc cgcagccgcc gccgccgccg ccgccgccgt cgccgagccc tcctcccagc
      181 ccgaagccct agccgaggac ccggccccct cgtcgcagcc cctgggccta tccagcgagg
      241 gcgcggggga gaggatgatg tcccgtgagg ctggcggtgg cgaggaagag gaggtggagg
      301 aggtcgaggt ggaggaggag gtggaggtcg acgaggacga ggatggggag ggggaggggg
      361 aggaggagga ggaggcggcg gagagggacg ccgactcgat ccaggcgctg ctgaattcgt
      421 tccccaagga ccagctcgtt gagctgctca gcgccgcggc gctcagccac gaggacgtgc
      481 tcacggccgt ccaccgcgcg gccgacgccg acccggcgct gcggaagatc ttcgtccacg
      541 gcctcggctg ggacgccacc gcggagaccc tcaccgaggc gttcagcgcc tacggcgaga
      601 tcgaggacct cagggtcgtc accgaccgcg ccacgggcaa gtgcaagggc tacggtttca
      661 tcctcttcag ccgccggtcc ggcgcccgcg cggcgctccg tgagccccag aagaagattg
      721 gcaaccgcac cacggcctgc cagctcgcct ctgttggtcc tgtgccgccg ggcggcatgg
      781 ccactaaccc tgccccagcg gtagccccag ccccagcgca gctggcattg ccgccagtgt
      841 cggagtacac gcagcggaaa atttttgtca gcaatgtcgg cgcagacata gacccgcaga
      901 aactgctgca gttcttttca aagtatggtg agattgagga gggtcctctt gggctcgata
      961 aggttaccgg gaagccgaag ggctttgctc tatttgtcta caagaccctc gatagtgcta
     1021 agaaagcgct tcaggagcca cacaagcaat tcgagggggt tgtgctgcac tgccagaagg
     1081 caattgatgg accaaagccc aacaaaggtg gaggacttgg gggtttgtat ggtgctggca
     1141 cttcaggcgg gaggaaaggc gctggtggtt atggagctca tagtcattct ttgcctggtg
     1201 ctgctgttgg gggccatgtg atgccatctc cagtatccag tttgacttca ttgccaggtg
     1261 tagctggtgg cccaggggtg aatcctgctc tggggcaggc cttgacagct atccttgcct
     1321 cccagggtgg agggttgggt ctgaacaaca tcctgggagt tggtgcaaat ggttcagggt
     1381 tgcctaaccc aggggcttct gcaggactgg gtagtagtgg tttgcctggg atgcctggtg
     1441 ctggtggtta tttgggcggc tatgggggtg gtggtgggta tggcagtact ccaccaggag
     1501 gcccaggaag aaattacatg ggtcattagg atgcttataa ctattttact gtggccagat
     1561 gattctacgt gttcctgctt cgcacttata aacttgctgt tttaagctgt ttctggcaaa
     1621 tcgattactc tagtggtcaa agttttcaca agaactttgt ttcctcaatc ctatctttca
     1681 aaattaagca gtatgtacaa ctatttagat tttcgaatgg ccatcagggc ttgtgacctt
     1741 attgtaaaag agcttgtgtg gatttaaaga accatggatc ttttct
//