LOCUS AK108776 1288 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-150-H12, full insert
sequence.
ACCESSION AK108776
VERSION AK108776.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1288)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1288
/clone="002-150-H12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 128..553
/db_xref="Osa1:LOC_Os03g56020"
/db_xref="RAP-DB:Os03g0770100"
/note="(RAP Annotation release2) RNA-binding region RNP-1
(RNA recognition motif) domain containing protein"
/note="(Rice Genome Annotation Project) glycine-rich
RNA-binding protein, putative, expressed"
/note="mapping to R03-TIGRv4S1-001539F (Chr.3: short
arm=31827304, long arm=31835348, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98519.1"
/translation="MLEERKLFVAGLPQQTREGDLRGHFARYGEVVHTRVVLDMASGN
SRGFGFVEFADEAATLRALADDEMPNHVFRGRKVMVMEDLLIIHVMLMEDQLDISMIL
WVLTIMLKIIAKLLLSTSIPQIPQRNDLLRQRRSWMGRR"
BASE COUNT 272 a 312 c 427 g 277 t
ORIGIN
1 gcaaatatcg caattagccc taaccccctt tcttcctttt cttccttcct acgcacacgc
61 acgcagccga gagcaacggc agcggcaacg gggggcggtc tcgccggagg cggtcacggg
121 gggatcgatg ctggaagaga ggaagctgtt cgtggcgggc ctcccgcagc agacgcggga
181 gggcgacctg cggggccact tcgcccggta cggcgaggtg gtgcacaccc gggtggtgct
241 cgacatggcc agcggcaaca gccgcggctt cggcttcgtg gagttcgccg acgaggcggc
301 gacgctgagg gcgctcgccg acgacgagat gcccaaccac gtcttccgtg gccgcaaggt
361 tatggttatg gaggacctat tgattattca tgttatgctt atggaggacc aattggacat
421 cagcatgatc ttgtgggttc ttactattat gctaaagatt atagcaaaac tactcctatc
481 gacctcgata ccacagatac cacaaagaaa tgacttgctg cggcagcgtc ggtcctggat
541 ggggcggagg tgatgggtag cgccttgtga ggatggtgct ccgagaagac tgtgcggttg
601 gtgccaacgc cgacgcggaa cggggtggtg agtgcgaagc cagcagcgga acggggtggt
661 gggtgcgaag ccgtcagcgt ccaacaggag cgaggtggag ccgaggagtg tgaggttgct
721 cgtccacgag atgtgctggt aggaggcgcc ggtcccttat ttcctctgcc atcagcacaa
781 ccccctacgg cgccggcttg gagatcgggc ggaggcttcc caagacgatg acgcctcttg
841 ctccttcctt ccatggcttc ggttgggacg atacgagacg gtaacggacg aggacgtagg
901 cagtggaggc ggtgacccgg cgggcgggag gcctctccgt ccactggcgg aagaggcgac
961 gacacagcgg gcagattccg gtggatcaga gagtattcag ggaaagagag ataggggaag
1021 aaggcatggg ccccactgat ggtaagccgg ctttggctgg ccatgtttgg ttagtgaagg
1081 aggtttggct agggagatgg cttggccatc tagattgtaa gtctgttgga atccattttt
1141 tatttaaaat tgttaaattt tgatttggag agtaggatag caacactgct gaagatgctt
1201 actcctatgt ttaatgaagc agaaactagt ggcgctgtaa atgtcacttc tctcttaaac
1261 tagtcgcgct gtaaatggca tttttctc
//