LOCUS       AK108743                2056 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-150-E07, full insert
            sequence.
ACCESSION   AK108743
VERSION     AK108743.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2056
                     /clone="002-150-E07"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..2056
                     /db_xref="Osa1:LOC_Os02g47900"
                     /db_xref="RAP-DB:Os02g0708600"
                     /note="(RAP Annotation release2) Zinc finger, C2H2-type
                     domain containing protein"
                     /note="(Rice Genome Annotation Project) SET domain
                     protein SDG117, putative, expressed"
                     /note="mapping to R02-TIGRv4S1-001229F (Chr.2: short
                     arm=29297180, long arm=29301272, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          582 a          384 c          486 g          604 t
ORIGIN      
        1 caaaagaaca gaaagggcaa gtgatgagct cctttatgat aaccataacc ttggtaagga
       61 tgatggttta cagaagttca cctgcagatt atgtgggatg atgtttgatc ttttgccaga
      121 tcttggccac caccatcaag ttgctcatac aaactcaggt acagtcagtg atatcccttc
      181 aggacgtgaa aagtatcagt ttaaccgtgg tcggcactat tattcagcct tcaagaaaag
      241 tttaagacca tccggctcat tgaagaagag gactagttct ggagttgaga aacattttaa
      301 ggctcaaagc ttggatctat ctatggatac atcacacatt gtggaatctg agaccaccac
      361 ccttggtagg ttactggatt tccaatgctc agacgtggca ttgactttat tttcaaagat
      421 tcaaaagaca agaccccacc caagcaacct tgatattctg tctattgccc gttctgtttg
      481 ctgtaagaca agccttcgtg ctgcattgaa agctaaatat ggaatcttgc ctgataacat
      541 atttgtgaaa gctgcaaagc tttgtagtga tgttggcatc caaattgatt ggcatcaaga
      601 agaattcttt tgccctaaag gttgcaagtc caggtctagt tctaattcct tgctcccttt
      661 acagcctacc caagttgatt ttgtgatgag tcctccaatt ggtgatgaga tatggggcag
      721 ggatgaatac cactatgttc ttgattcaga gcactttggt tggaatctta agaatgagat
      781 ggttattgtt tgtgaagatg ttagctttgg cagggagaaa gttccagttg tctgtgccat
      841 tgatgtagat gcaaaagaat ttccatatat gaaacctgga gaaattttgc aaagtgaaaa
      901 ttctctgccc tggcaaggtt tccactacgt cacaaagcgt ttgatggatt catctcttgt
      961 tgattcagag aacactatgg ttgggtgtgc ttgttctcat gcccattgca gtcctgagga
     1021 atgtgatcat gtgagcctct ttgatagtat ctatgagaac ctagtggatc tccatggtgt
     1081 acctatgcgt ggtagatttg catatgatga aaatagcaaa gttattttgc aggaaggata
     1141 tcctatatat gagtgcaatt catcatgcac ttgtgatgcc tcctgtcaga ataaagtact
     1201 gcagagagga ctgctggtaa agttggaagt cttcagaact gagaataagg gttgggctgt
     1261 tagagccgca gaacctattc cacagggcac atttgtatgt gagtacattg gagaggtttt
     1321 gaagatgaag gatgatgggg ccataagaca tgtagaaagg gaggcaaaaa gtggtagcag
     1381 ctacttgttt gaaatcactt ctcagattga cagggaaaga gttcagacta cagggactac
     1441 tgcatacgtg attgatgcca caagatatgg caacgtatcc cgttttatta atcatagctg
     1501 ttccccaaat ctcagtacgc gtttagtttc ggtggagagc aaagactgtc agcttgcgca
     1561 cattggtttg tttgcaaacc aggatatctt gatgggagaa gaattggcct atgactatgg
     1621 acaaaaattg ctacctggtg atggatgccc ctgccattgt ggtgctaaga attgccgagg
     1681 acgtgtgtat tgagtttgca gtggggcaga aaatggtaac ggagcagtcc aatccttagc
     1741 atatctccag aagttcctac aatggcgtca cttagcaagg gatagcaatg tttttttcta
     1801 gagcaacaat gcagtgctag gatctaattc cccatgcatc attaggaatc atcatatagg
     1861 tctctcaaca gttattaggc acaccatacg attgatttta gtgtggcaca cttatgctta
     1921 actgatcatt tgttaggagc aacctgaaat gaaagcagtt caggctgcat tgttcgtagg
     1981 ccagaagtga agtgtcgttg taacatacct tcattcaatt tttactgctc ataagcgcca
     2041 tcgtcgaagt tgaacc
//