LOCUS AK108045 1795 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-137-E05, full insert
sequence.
ACCESSION AK108045
VERSION AK108045.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1795)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1795
/clone="002-137-E05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1795
/db_xref="Osa1:LOC_Os08g15420"
/db_xref="RAP-DB:Os08g0253800"
/note="(RAP Annotation release2) Glycosyl transferase,
family 2 domain containing protein"
/note="(Rice Genome Annotation Project) CSLC3 - cellulose
synthase-like family C, expressed"
/note="mapping to R08-TIGRv4S1-000355F (Chr.8: short
arm=9377785, long arm=9381326, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 357 a 575 c 509 g 354 t
ORIGIN
1 tctcatccag atgccaatgt gcaacgagaa agaggtgtat gagacgtcga tatcgcatgt
61 gtgccagatc gactggccgc gggagaggat gctggtgcaa gtgctggacg actcggacga
121 cgagacgtgc cagatgctga tcaaggcgga ggtgaccaag tggagccagc gcggcgtcaa
181 catcatctac cgccaccgcc tcaaccgcac cggttacaag gccggcaacc tcaagtccgc
241 catgagctgc gactacgtcc gcgactacga gttcgtcgcc atcttcgacg ctgacttcca
301 gcctaacccc gacttcctca agctcaccgt cccacacttc aagggaaacc cggagctagg
361 gctggtgcag gcgcggtgga gcttcgtgaa caaggacgag aacctgctga cccggctgca
421 gaacataaac ctgtgcttcc acttcgaggt ggagcagcag gtgaatggcg tctacctcag
481 cttcttcggg ttcaacggca ccgccggcgt gtggcgcatc aaggccctcg aggactccgg
541 cggctggatg gagcggacca ccgtcgagga catggacatc gccgtccgcg cccacctcaa
601 cggctggaag ttcatcttcc tcaacgacgt caaggtcctc tgtgagctgc cggagtcgta
661 ccaggcttac cggaagcagc agcaccggtg gcactccggc cccatgcagc tcttccgtct
721 ctgcctcccg gccgtcttca agtccaagat ctcgacgtgg aagaaggcga acctggttat
781 gctgttcttc ctgctgcgga agctgatcct gccattctac tcgttcacgc tcttctgcgt
841 gatcctgccg ctgaccatgt tcgtgccgga ggcggagctg ccgatctggg tgatctgcta
901 cgtgccggtg atcatgtcgg tgctcaacat cctgccggcg cccaagtcgt tccccttcgt
961 catcccttac ctcctcttcg agaacaccat gtccgtcacc aagttcaacg ccatggtctc
1021 cggcctcttc cagctgggga gctcctacga gtgggtcgtc accaagaagg ccggcaggac
1081 ctcgtcggag tccgacatcc tcgccctcgc cgaggccgcc gacgccgacg cccggccgcc
1141 accggccaag ctccaccgcg gcgtctccga gggcggcctc aaggagtggg ccaagctgca
1201 caaggagcag gaggacgcca cggcggcggc ggcggcggcg gcggcgccgg ggacgccggt
1261 gaagaagagc aaggcggcga aggctccgaa ccggatcttc aagaaggagc tcgcgctggc
1321 gttcctcctc ctcaccgccg ccacgcgcag cttgctctcg gcgcaggggc tgcacttcta
1381 cttcctcctc ttccagggcg tcaccttcct cgccgtcggc ctcgacctca tcggcgagca
1441 ggtcagctag cgaccaccac cacaataaag aaaaaaaagc caccgccgcc gccgctgtcg
1501 ccgccatgcg tgcacagcgc gccggctggc tggccggagg cgaagacgac gacggccagc
1561 caagacactt ccatggatcg acagaggatt acatttttag ccttcttctc cttattttta
1621 tccctttgat atattttttg ttcagagata aaaaaaacag agtgcgtctc catgttacaa
1681 agaactcttc ttttctttgt gctttaatta gctagtgctt tgttgctagg agaggcaagc
1741 aggccgcatc aggttgttaa ttacattcag attaagttgt gtcaattcag tagcc
//