LOCUS AK108033 1734 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-137-B12, full insert
sequence.
ACCESSION AK108033
VERSION AK108033.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1734)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1734
/clone="002-137-B12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 136..1581
/db_xref="Osa1:LOC_Os05g38850"
/db_xref="RAP-DB:Os05g0464100"
/note="(RAP Annotation release2) MCM family protein"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor MCM8, putative, expressed"
/note="mapping to R05-TIGRv4S1-000775F (Chr.5: short
arm=22706088, long arm=22710750, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG98258.1"
/translation="MYDDGPRKGKPGGLSMDAATAAGLAAVWPEYFPEESEFAADGRS
ARLAADLVDLFSSPDASDLLSRVEDDGDILSLPVDFQQLSNLTWITEALQENPKEALL
SMGAAVHLIVCASRDLQLGDINKINIRLYNHTKTIALKNLKAAYIKKLVTVRGTVLKV
STVKPLVLQLNFQCMKCATKFPRVFCDGKFSPPVSCSIQGCKSRTFIPMRSTAKLMDF
QKIRIQELASGESHEEGRVPRTIECELTEDLVDCCIPGETVTVTGIVKVLNNYMDVGG
GKSKSRNQGLYYLYLEAISVRNSKVHAASGNSDAASGSFGFQAFTEKDLEFISKFKEE
HGADVFRQILHSFCPSIYGHELVKAGITLALFGGVQKHSIDQNKVPVRGDIHAVVVGD
PGLGKSQLLQAAAAVSPRGIYVCGNTTTNAGLTVAVVKDSMSNDYAFEAGAMVLADRG
ICCIDEFDKMSAEHQVLTLYKLHSEMLIRKP"
BASE COUNT 440 a 414 c 433 g 447 t
ORIGIN
1 gagcttcacg ccgtcctcgc tcgccgcgct aaaaatttcg ctccgcccgc cccccaactc
61 tcctctcccg ccgccgccgc cgctgccgcg caactcgccg gagagagaag ggagcggccc
121 atttctcagg cgaacatgta cgacgatggt cctcgcaagg gaaaacccgg cggcctctcc
181 atggacgccg ccaccgccgc ggggctcgcg gcggtctggc cggagtactt cccggaggag
241 agcgagttcg ccgcggacgg ccgcagcgcg cgcctcgccg ccgacctggt cgacctcttc
301 tcctcccccg acgcgagcga cctcctctcg cgagtcgaag atgatggtga tatcctctcc
361 cttccagttg atttccagca gctatcgaat ttgacctgga ttactgaagc tctccaggaa
421 aatccaaaag aagccttgct ttccatggga gctgcagttc atctgattgt gtgtgctagc
481 agggacttgc agttgggcga catcaacaaa atcaatatca ggctttacaa ccacaccaag
541 actattgcct tgaagaattt aaaagcggcg tatattaaga aacttgtgac agtgcgtgga
601 acagtcttaa aagtaagtac ggtgaagcct ctagtgctgc agctgaattt ccaatgcatg
661 aaatgcgcta caaaattccc tcgtgtgttc tgtgatggga agttttcacc tccagtatcg
721 tgcagtattc agggatgcaa gagcagaaca ttcataccaa tgagatctac tgcaaagttg
781 atggattttc agaaaataag gatacaagag cttgctagtg gtgaaagcca tgaagaaggc
841 agagtgccac gaactataga gtgtgagctt acagaggatc ttgtagattg ttgcatccct
901 ggagagactg taacagttac tggaatcgtc aaagtactga acaactacat ggatgttgga
961 ggagggaaat ccaaaagcag gaaccaaggt ttatactacc tgtacctgga agcaatttca
1021 gtaagaaact caaaggtcca tgctgcttca ggaaattcag atgctgctag tggatctttc
1081 ggttttcaag cttttactga aaaggatctt gaattcatct ccaaatttaa ggaagaacac
1141 ggtgctgatg tttttcgtca aattcttcac tccttttgcc cctctatcta tggacatgaa
1201 cttgtaaaag ctggtatcac ccttgcgctt ttcggtggtg tgcagaagca ctccattgat
1261 caaaacaagg tcccagtgag aggagacatt catgctgttg ttgttggtga tcctggacta
1321 ggcaagagtc aactgctaca ggctgcagca gctgtttctc cacggggtat atatgtttgt
1381 gggaatacaa caacaaatgc tggtctaact gttgctgtgg ttaaagattc tatgtcaaat
1441 gattatgcat ttgaggctgg tgccatggtc cttgctgacc gtggaatatg ctgtatcgat
1501 gagttcgata aaatgtcagc agagcatcag gttttaacct tgtataagct tcactctgaa
1561 atgttaatta gaaagcccta acctgccaca tcatgtttct aatgaatttg agttcatagg
1621 ctttactgga agccatggag cagcaatgtg tatctgtggc aaaggctggc cttgtggcaa
1681 gtttatcagc ccgtacttct gtgctagcgg ctgctaatcc tgttggtggt catt
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