LOCUS AK107235 1755 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-125-E11, full insert
sequence.
ACCESSION AK107235
VERSION AK107235.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1755)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1755
/clone="002-125-E11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1755
/db_xref="Osa1:LOC_Os06g48720"
/db_xref="RAP-DB:Os06g0700700"
/note="(RAP Annotation release2) Similar to P1B-type
heavy metal transporting ATPase"
/note="(Rice Genome Annotation Project)
cadmium/zinc-transporting ATPase 4, putative, expressed"
/note="mapping to R06-TIGRv4S1-001134R (Chr.6: short
arm=29476950, long arm=29479908, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 465 a 366 c 422 g 502 t
ORIGIN
1 ctatccccga ttcgcacaac caatctcttc ttgcttcctc ctcctcctcc tccagccgcc
61 gccgccgacg acgattcttg gtagagagat tcttgcgttg ttttacctgc gtcttgttct
121 tcttgggagt tgggtggatc gattgatcga ggttttggag gttggaagaa gtgtgtgttg
181 tggtgggggg tttgtagaga gagagagggc aaaggcacgc aaagagggag agagtgagga
241 gagatggcgg cggagggagg gaggtgtcag aagagctact tcgacgtgct ggggatttgc
301 tgcccgtcgg aggttcccct cgtcgagaag cttctgcagc cgctggaggg cgtccagaag
361 gtcaccgtga tcgttccccc caggacggtc atcgtcgtcc acgacgtcga cgccatctcc
421 caatcccaaa tcgtcaaggc gctgaatcag gcaaggttgg aggcgtcggt tcgggcttat
481 gggaacggca gtgagaagat caccaacaaa tggccgagcc cgtatgttct cctctgcgga
541 cttcttctgg tcgtgtcgct gttcgagcat ttctggcacc cgctcaagtg gttcgcgctg
601 gtggctgcgg ccgccggctt gccgccgatc gtgctgagga gcattgcggc catccggaga
661 ctcaccctgg atgtcaacat actcatgctg attgctggta agaacagcct ataattcacc
721 tgtgacatta atgatgtttc ctgttattgg taccttgaaa aaaaaagaag ctcccttttg
781 ttggaggatg gccctgacca tcacctccga cgatcgaaga ccctttgatc tttaggagat
841 aactgaatta taaaatttta aataggcttc cttcatctgg tggcctaatg catgcatttt
901 ggcttgtacc aaaacctact ttctctcttt aatgaaatga aaagcagagg tcccaccata
961 ctttttgaaa agaaatgaac gtttaaatag tatcgaatgg tagcaaacac atctgccatt
1021 aaggatatcc tccaattgaa tagtctcatt tgaaataaga aaacaaatta ttgacacagc
1081 ttagtagtag agcattgagt tttaacgttg atgccatggg tttgaagctt tttttttctg
1141 tattaaaagg gcaacagtat acttgttcct tttttttacc atagtattct cttgtgtgta
1201 gaagacacaa atacaacacc actttgggta aatattcaac tacggattga agttgtgggt
1261 attattgata cctgttctac cagtgtgaca atgggttgtg aaaaaaaaag agacaaaagc
1321 aagtttcttc acgaggacca atatggtggg tgattagtgg gagagcagaa gcagaaatcc
1381 atctctcaaa agtttatgtc tcacttgcat aaacttttgc tttcttttct tttctagagg
1441 gtccctcact ttccatcaca tcaaaaggat atgttgctgt gatgctaata tacgtgctag
1501 atgaacaatt ctgcttcttt tcctccatgt ggcgatgtca cctcagatag ggcatcagat
1561 tccttttaga acaagcaaca tatttcttat caagaagcta cacatatttc gaataattct
1621 ttctagacta atatcgtggc attgagatag ctctattgtg atatgcatat gggaatatgg
1681 gatacatgaa agaatcatca aaagaaacaa gaaatacctt gtttcaaaaa gaaaaaaaga
1741 tttggaagat ttggt
//