LOCUS AK107185 1619 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-124-H08, full insert
sequence.
ACCESSION AK107185
VERSION AK107185.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1619)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1619
/clone="002-124-H08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1619
/db_xref="Osa1:LOC_Os05g12040"
/db_xref="RAP-DB:Os05g0211100"
/note="(RAP Annotation release2) Similar to Cytochrome
P450-like protein"
/note="(Rice Genome Annotation Project) cytochrome P450
51, putative, expressed"
/note="mapping to R05-TIGRv4S1-000305R (Chr.5: short
arm=6862049, long arm=6864163, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 322 a 476 c 502 g 319 t
ORIGIN
1 tgttcctggc tcaactgttc gtcgctgcaa caatgttgag taagattgca acaagagaaa
61 gaacaagaac cactggcaca aaattctcta gaccaccgcc tccacccttg gcccgtggag
121 ctcctcttgt aggggtttta ccatcgcttc tcgccaatgg cccggtggaa ttcatccgcc
181 accattatga gaagatggga agcgttttca ctgttagctt gctccaacag aaggtgactt
241 tcttggttgg gtcagaggcg tcaagccatt tttacaaagg gttagattca gagatcagcc
301 aggatgaggt ctcgcaattc accataccaa cctttggtcc cggggtcgct tttgatgtgg
361 attatgccac tcgacacgag cagttccggt tctttggtga tatcatgaag ccggcgaagc
421 tgaggactta cgttgatctc atggttgctg aagtggaggg ttactttgca agatggggac
481 agtccggcac tgtgaacatg aagcaagagt ttgaacaact cgtcaccctc atcgctagcc
541 gttgtctact aggggaggag gtcagggaca agatgttcga cgaggtctcg acgctcctcc
601 gcgagctcaa cgacggcatg cgcctcgtca ccatcctgtt cccgcgcctc cccatcccgg
661 cgcaccgccg gcgagacagg gcgcgcgcca ggctcggcga gatattctcc gacatcgtga
721 ggtcccgcag gggcagctcc ggcggcggcg gcggcggcgg cggagcccgg cacgacgaca
781 tgctgcagtg cctgatcgac gcgaggtaca aggacggccg cgccacgacg gagacggagg
841 tcgccgggat gctcgtcgcg gcgctcttcg ccgggcagca cacgagctcc agcaccagca
901 cctgggccgg cgcgcgcctc ctcaccaacc ccgaccacct ccgcgccgcc gtggaggagc
961 aggcgcggct actccgtcgg cacggcggcg accgcgtcga ccacgccgcc ctagcggcga
1021 tggacaccct gcagcgctgc gtgaaggaga ccctgcggct ccacccgccg gccctgatgc
1081 tgctgcgcca cgcgcggcgg agcttcgtcg tgcgcggcgg cagcggcgag cgcgagtacg
1141 aggtgcccga gggccacacg gtggcgagcc cgctgctgct ccacaacgcg ctgccgcggg
1201 tgtaccggga ccccggcgag ttcgacccgg gcaggttcgg cgccgggagg gaggagggtg
1261 caggtgggct ggcgtacacg gcgttcggcg gcgggcggca cgcgtgcgtg ggcgaggcgt
1321 tcgcgtacat gcagatcaag gtgatatgga gccacctgct gcgcaacttc gagctgcagc
1381 tggtgtcgcc gttcccggag acggactgga ccgtcgtcat gccggggccc aaggggaagg
1441 tcatggtcac ttacaacagg aggaaactta cctagttatt atcagttaaa actggaggta
1501 taatcatcgt atgtgtttaa gcatgtgtaa aacatctcat catgtattct caactagtac
1561 ataactcata tctatctcta tcttttctct actattataa aaattgaaga tgtgttttt
//