LOCUS AK107003 1475 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-120-D01, full insert sequence. ACCESSION AK107003 VERSION AK107003.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1475) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1475 /clone="002-120-D01" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 422..895 /db_xref="Osa1:LOC_Os02g49970" /db_xref="RAP-DB:Os02g0732400" /note="(RAP Annotation release2) ZIM domain containing protein" /note="(Rice Genome Annotation Project) ZIM motif family protein, expressed" /note="mapping to R02-TIGRv4S1-001304F (Chr.2: short arm=30522776, long arm=30524668, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG97910.1" /translation="MPPPAAVASLTLQVPGGAHDVTSLATSPRTMAVPGTTEQLTIFY SGSMVKFDNVPREKIRYACRLRRLYSSLQRSLQTQDTSMFPSSSSLHIQTKRRGYSVI RLLREMLMVCSSTRTKPMLVHSDSIGAQRTGTPPSRRRIHARGKSRSCQEMSHCW" BASE COUNT 366 a 375 c 391 g 343 t ORIGIN 1 gcaagcacac cccccgcgcg cgcgcgcgtt tcgttcgaac gatcgatgcg ccccggagca 61 cacggcacgc acccgcgccg cgagagaaga ggaaaccaag cgatgccgtc ggcccgtgac 121 actaacatgg acttgatgga agtcctctcg ccgccggccg ccgcacggga tcatcagaag 181 agccaggttc gtgtccagag gagcctctca agctcttctg gggtgtttca gggatctctc 241 acgtttctct ttgtggaaaa aaaaactagg caaaaaaagg gtttgcctaa tgtagtaaag 301 cagggggagt ttgaaagggc tctctctcac gttgggtaag cttgccaccc ggccccccca 361 ggtgcacgcc gccgcgcgtg cgctaccgca ccaaagcgcc agcgttgtcg tggacggacg 421 catgccgccg ccggccgccg tcgcaagcct gacgttacaa gtccccggag gagctcacga 481 tgtcacttct ctggctacta gtccaaggac catggccgtg cctggaacga ctgaacagct 541 gacgattttc tactccgggt ctatggtgaa gttcgacaac gtcccaaggg agaagattcg 601 ctatgcgtgc aggctgagga ggttatattc ttcgctgcaa agaagtctcc agacgcagga 661 caccagcatg ttccccagca gcagcagcct gcatatccaa acaaaaagaa gaggatattc 721 tgttatcagg ctcctgagag agatgctgat ggtttgttca tccacgagaa caaagccgat 781 gcttgttcac agcgacagca tcggagccca gaggacgggt acgccaccat caaggagacg 841 aatccatgct cgcggcaaat ccagatcgtg ccaagagatg tctcattgct ggtgaagaat 901 gcgtctcttg ttagcttcct ggagagccgc aagcagaggt tggcgagtgc agcttacact 961 cgccgtgaga aatctcctga tgaaaaggac atttttccta cggctttccc acgaaataaa 1021 accccactcg gcaacacgga acggcatagt gctttcacga acctgaagaa tattaacgga 1081 aatcatgacg aggaggcact agataccgag ttgaagatct agccgcgaag ttttggattc 1141 agtttgcggc acgggaacct cttgctaatc aagcacaagt tttggactca gtaggtggag 1201 tgatgaacta agtagaaacc tagtggtgca tttggtagca agagcctttt tttttcttat 1261 tttaattctg aatttctgat gaggtttttt aagtgcagta gtgatgttca ctcgcagttt 1321 catatgaaac cgaggcatcg tcaccctttt cttcttctca ttgacgggag aaaaggtttt 1381 cggattcgtt cggattgttg cctctgatta cattgatcag attgcacggt cctttttgta 1441 actgaggata gctgaaataa aatactattt tgttt //