LOCUS       AK107003                1475 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-120-D01, full insert
            sequence.
ACCESSION   AK107003
VERSION     AK107003.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1475
                     /clone="002-120-D01"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             422..895
                     /db_xref="Osa1:LOC_Os02g49970"
                     /db_xref="RAP-DB:Os02g0732400"
                     /note="(RAP Annotation release2) ZIM domain containing
                     protein"
                     /note="(Rice Genome Annotation Project) ZIM motif family
                     protein, expressed"
                     /note="mapping to R02-TIGRv4S1-001304F (Chr.2: short
                     arm=30522776, long arm=30524668, direction=forward) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG97910.1"
                     /translation="MPPPAAVASLTLQVPGGAHDVTSLATSPRTMAVPGTTEQLTIFY
                     SGSMVKFDNVPREKIRYACRLRRLYSSLQRSLQTQDTSMFPSSSSLHIQTKRRGYSVI
                     RLLREMLMVCSSTRTKPMLVHSDSIGAQRTGTPPSRRRIHARGKSRSCQEMSHCW"
BASE COUNT          366 a          375 c          391 g          343 t
ORIGIN      
        1 gcaagcacac cccccgcgcg cgcgcgcgtt tcgttcgaac gatcgatgcg ccccggagca
       61 cacggcacgc acccgcgccg cgagagaaga ggaaaccaag cgatgccgtc ggcccgtgac
      121 actaacatgg acttgatgga agtcctctcg ccgccggccg ccgcacggga tcatcagaag
      181 agccaggttc gtgtccagag gagcctctca agctcttctg gggtgtttca gggatctctc
      241 acgtttctct ttgtggaaaa aaaaactagg caaaaaaagg gtttgcctaa tgtagtaaag
      301 cagggggagt ttgaaagggc tctctctcac gttgggtaag cttgccaccc ggccccccca
      361 ggtgcacgcc gccgcgcgtg cgctaccgca ccaaagcgcc agcgttgtcg tggacggacg
      421 catgccgccg ccggccgccg tcgcaagcct gacgttacaa gtccccggag gagctcacga
      481 tgtcacttct ctggctacta gtccaaggac catggccgtg cctggaacga ctgaacagct
      541 gacgattttc tactccgggt ctatggtgaa gttcgacaac gtcccaaggg agaagattcg
      601 ctatgcgtgc aggctgagga ggttatattc ttcgctgcaa agaagtctcc agacgcagga
      661 caccagcatg ttccccagca gcagcagcct gcatatccaa acaaaaagaa gaggatattc
      721 tgttatcagg ctcctgagag agatgctgat ggtttgttca tccacgagaa caaagccgat
      781 gcttgttcac agcgacagca tcggagccca gaggacgggt acgccaccat caaggagacg
      841 aatccatgct cgcggcaaat ccagatcgtg ccaagagatg tctcattgct ggtgaagaat
      901 gcgtctcttg ttagcttcct ggagagccgc aagcagaggt tggcgagtgc agcttacact
      961 cgccgtgaga aatctcctga tgaaaaggac atttttccta cggctttccc acgaaataaa
     1021 accccactcg gcaacacgga acggcatagt gctttcacga acctgaagaa tattaacgga
     1081 aatcatgacg aggaggcact agataccgag ttgaagatct agccgcgaag ttttggattc
     1141 agtttgcggc acgggaacct cttgctaatc aagcacaagt tttggactca gtaggtggag
     1201 tgatgaacta agtagaaacc tagtggtgca tttggtagca agagcctttt tttttcttat
     1261 tttaattctg aatttctgat gaggtttttt aagtgcagta gtgatgttca ctcgcagttt
     1321 catatgaaac cgaggcatcg tcaccctttt cttcttctca ttgacgggag aaaaggtttt
     1381 cggattcgtt cggattgttg cctctgatta cattgatcag attgcacggt cctttttgta
     1441 actgaggata gctgaaataa aatactattt tgttt
//