LOCUS AK106986 1935 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-120-A01, full insert
sequence.
ACCESSION AK106986
VERSION AK106986.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1935)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1935
/clone="002-120-A01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1935
/db_xref="Osa1:LOC_Os09g29404"
/note="(Rice Genome Annotation Project) glycogen operon
protein glgX, putative, expressed"
/note="mapping to R09-TIGRv4S1-000514R (Chr.9: short
arm=17850428, long arm=17858032, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 475 a 465 c 526 g 469 t
ORIGIN
1 caatgggaac agttggaaca aagaagagat ggccatttca ggtttttctc agagatgata
61 aagtttcgtc acagcaaccc aatattaaga cgagacaggt ttcttaataa aaacgatgtc
121 acctggcacg aggattgttg ggagaaccag gaaagcaaat ttttggcatt cacagtacat
181 gatcacaact ctggtggaga tatctatttg gcattcaatg cacatgacta ttttgtggac
241 gctgtaattc ccccaccacc acaccataaa tgttggaacc gtgtggtgga taccaacctg
301 gaatcaccaa atgatattgt accagaaggg gtgccattta caggaccaaa atacagaatt
361 gctccatact cttccattct gctcaaggca aagccttaga aaagttagta gttgagagca
421 taaaaataat gccaccaatg ctggcttggt tggttaataa caggttgatc acattagcag
481 tctgcacttc aaaaaggcaa caggtataga gaatgtctaa taacaactgc cgaatcatag
541 ttggctttgg cagatgaggc cacttttggc attcaggaat ttcttccagt tattactgta
601 ggaatgaatg ggctagggct tagggccctc tgggggcagc aaagctcgag gtgtcgtctc
661 ggtttcatgt gagcgtgacc tggctatggt caccctatca tttatcaagg tcctgtttcg
721 taataatgtg tcatcaaaca ctcaactccc atgagaatgt atgccagcat ctattttgct
781 ggaaattcat gaaaaaaagg aacaatgcta ttagtcccat gaagtatgaa catatgtcag
841 tgtgtatttc ttgcatgatg cagaggctgc gatattctgc gcctgcacct cccggtacgg
901 gctgcggcgg caggctcccg actgacggcg accccggttg gtacggaggg aaagcttcca
961 catgtgcaac ggcggcaagc tacagtgttc ccaggcaggc accaacctgt tctccaatgc
1021 agccaagaga agagccagct tcgacttgac aagataacat ggccatttga cagagctggg
1081 ccagccggtg ctgctcttaa ccaaggcgtg tgaaaggtta actcgcctct cctgccaatc
1141 tcacctgaat atcaagcgcc tacagtgcag cctgagccag catcatcgta ccagcagatc
1201 agatctttga gcccccgttt tcgtttgggt tatgtacacg tactgcagcc gatcgatccg
1261 ttgctgtacc gatggatctg agctgatgat gcactcactg tgctccagat ctggtcgatc
1321 tcctttaata ctcccatcta aaaataagag gaattattgg tacatacgct ggcgcagtat
1381 ttcacagcat ttccggtggg attttcgctc agctgcgtcg atcccgtgag gtgaaaaggc
1441 ctgtagctag ccagctgggg agcagcgaaa ggctgcgata gattacgggc accgggtcgg
1501 tcggtggggg cgccgcacga tggcgagatg tcgagacgag gcgaggcccg cgcggcacgt
1561 gccggtggtg gtgcccgatc ctcgcggcag cgacagcccg cagacggcag aggcggaggc
1621 gcaacgcgag cggaggcgga cgcgacgcga cgcgcgcgtg ggtttcccgg tgtttttgct
1681 gtgttttttc tcccgtcctt ttcgtgcggg cggcggtttg cgcgcggtgc cggcttgcgg
1741 ctttacttag ctgtaggcaa gcaaaggggg gggcagcgtc acggacggct gcgtgcggcg
1801 cggcaagcag cagcacagca gatgcaacgc ggggtcgtca gctgtttagg tagttcgttc
1861 tctctccttt tctaactttt actcactcac gtccaaaaaa aacaatcgat gtgaatgcga
1921 tttcagtttg gttgt
//