LOCUS AK106744 1705 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-115-B08, full insert
sequence.
ACCESSION AK106744
VERSION AK106744.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1705)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1705
/clone="002-115-B08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 128..1441
/db_xref="Osa1:LOC_Os05g40330"
/note="(Rice Genome Annotation Project) auxin hydrogen
symporter, putative, expressed"
/note="mapping to R05-TIGRv4S1-000845R (Chr.5: short
arm=23614534, long arm=23617428, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG97816.1"
/translation="MMGRSVLEMVVAAAQGGGGAAGESVLGMFRYAVLPIAKVFVVCF
MGFLMASKRVGVLKPSGRKLLNALVFSLLLPCLIFAQLGRSITIDKIMEWWFIPANIA
LGAVSASLVGLIVALIVRPPYPYFKFTITHIGIGNIGNIPLVLISALCRDQLNPFGDS
NKCTQDGNAYLSFGQWVGAIIVYTYVFKMLAPPPGQTFDSCDEERDKLPIKAPNTMSS
VAKYPSSAHGNTHEEEPLLSIEEEEEEEGQDVHSLGSKIMIPIKGMVRFLQKKQLLQP
PIIASVLAITLGVVPFLKNLILTDDAPLFFLTDSCLILGEAMIPCILLAVGGNLVDGP
GEGSRRLGVRTTVAIIFARLILVPIAGIGIVSFADKLGFIPKGDKMFKFVLLLQHSMP
TSVLSGAVANLRGCGKESAAILFWVHIFAVFSMAGWIILYLTMLF"
BASE COUNT 381 a 376 c 455 g 493 t
ORIGIN
1 agctgcttgg ccgtcgcgac gcagccgcgt ctgttcgatc agttcagctc gcgcggtttt
61 aggtggggag gaatcctgtt cgatttcgcc ggttgcttgt ggtttcgtgt cggaggcggg
121 ggcggcgatg atggggaggt cggtgctgga gatggtggtg gcggcggcgc agggcggcgg
181 cggcgcggcg ggggagtcgg tgttgggcat gttcaggtac gccgtgctgc ccatcgccaa
241 ggtgttcgtc gtctgcttca tggggttcct catggcgtcc aagcgcgtcg gcgtgctcaa
301 gcccagcggc cgcaagcttc tcaatgcgct tgtgttctct ctgctccttc cttgcctaat
361 atttgcgcag ctcgggagat caatcacaat tgacaagatc atggagtggt ggttcattcc
421 agcaaacatt gctctgggtg cagtctctgc atctttggtt ggacttatag tggcattgat
481 tgtacggccg ccttatccat acttcaagtt caccatcact cacattggaa tagggaacat
541 tggaaatata ccacttgtcc ttatctcggc attatgtcgc gaccaattaa atccgtttgg
601 tgactcgaac aaatgtactc aagatggaaa tgcatactta tcatttggtc aatgggttgg
661 tgccattatt gtttacacat atgtgttcaa gatgcttgct ccaccccccg ggcagacctt
721 tgacagctgc gatgaggaga gagataaact tccaattaag gctcctaata ccatgtcaag
781 tgtagcgaaa tatccatcaa gtgctcatgg caatacacat gaggaagagc ccctgctatc
841 tatagaggag gaggaggagg aggaggggca ggacgttcat tctttaggtt caaaaataat
901 gattcctatc aagggcatgg ttagattcct acaaaagaag cagctcctcc aaccaccaat
961 cattgcatct gttcttgcaa ttactctcgg tgttgtgcca ttcttgaaga atttgatcct
1021 cacagatgac gcgcctctat tctttttaac agatagctgt ctcattcttg gggaagctat
1081 gattccgtgc attttgcttg ccgttggtgg caatcttgtt gacggccctg gtgaaggaag
1141 taggagactt ggggttcgga ccaccgtcgc gattatattt gcacgcttga tattggttcc
1201 aattgctggt attggcatcg tctcatttgc tgacaagctt ggatttattc caaaaggaga
1261 caagatgttc aagttcgtcc tgttactgca gcactctatg cccacatcgg tactatcagg
1321 tgctgttgca aacctaagag gttgtggcaa ggaatcagct gcaatcttgt tctgggtgca
1381 catttttgct gtcttctcca tggcaggatg gattatctta tatcttacca tgctgttcta
1441 gatactaact gcactatgac ataatatgat atgttcatga aatacatgtt gctgcaaagt
1501 gcaaggtgat tggaagtgcg accctgttgg atctgcgggt tgcattttcc gggccgtgga
1561 caattgcgag aggcctgcta ttgtatgttt tgtttggtta gctgctgaaa acaatagatg
1621 aggcaaagga attgtgtcag cacctcttgt acatttgatc gtaaaatgca ggatatctcc
1681 aactaataga gagccttgta tcccc
//