LOCUS AK106651 1621 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-113-F10, full insert
sequence.
ACCESSION AK106651
VERSION AK106651.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1621)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1621
/clone="002-113-F10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1621
/db_xref="Osa1:LOC_Os06g44900"
/db_xref="RAP-DB:Os06g0659400"
/note="(RAP Annotation release2) Protein of unknown
function DUF231, plant domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R06-TIGRv4S1-000913F (Chr.6: short
arm=27147694, long arm=27149752, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 281 a 528 c 505 g 307 t
ORIGIN
1 actgctcggc tcgactcctc ctgctagctc gcccgtatcc agctctacct tcgccggcgg
61 tggcggcggt gatcggtggt cctcgatcga tgccgccgcc gctcccgtgg cggcgcctcg
121 tcgtcccgct cctcgccgtc gtctccatgc ctttcgttct cccgctcgca ctcccgttcc
181 tcctccgctc ctcctcctct cgccagccgc tctccgtcca ccgcctcgac tggctccctc
241 ctctgtcccc gctgcctcgc accccggatc catcaactcc gccgccgccg ccattgacgc
301 tcccgttggc gccactgacc actccgccgc cgccgccgcc atcgactctc ccgatggcac
361 caccaacgag gtcgtcgccg gccgcttccc cgccgcctcc cgagaagggc gagggtggag
421 gaacgacatg cgacttgtac gatggggagt gggctcgcga cgaggcggca cggccgctgt
481 acgcgccggg gacgtgcccc tacgtcgacg aggcgtacgc ctgcgcgtcg aacggccggc
541 cggacgccgc gtacacgcgg tggcgatggg cgccgcggcg gtgccgcctc cccaggttca
601 acgcgacgga tttcctggcg acgctgcggg gcaagcggct gatgctcgtc ggcgactcca
661 tgaaccggaa ccagttcgag tccctgctct gcatcctccg cgaggccatc ccggacaaga
721 cgaggatgtt cgagacccac ggctacagga tcagcaaggg ccgcggctac ttcgtcttca
781 agttcgtgga ttacgactgc actgttgagt tcgtgcgatc gcatttcctt gtccgggaag
841 gcgtgcgcta caatcggcag aagaactcca acccgatcct ccagattgac cggatcgaca
901 agtcggcgag ccggtggagg aaggtcgatg tcctcgtctt caacaccggc cactggtgga
961 cgcacggcaa gacggcgaga ggcatcaact actacaagga aggcgacacg ctgtacccac
1021 aattcgactc gactgaagct tacaggagag ctctcaagac ctgggctcgc tggatcgaca
1081 agaacatgga cccggccaag agtgtcgtct tctaccgagg ctactccact gcacatttca
1141 ggggagggga gtgggattcg ggtgggtcgt gcagcgggga gagggagccg acgctcagag
1201 gggcggtgat cggcagctac ccgcggaaga tgaggatcgt ggaggaggtg atcgggagga
1261 tgcggttccc ggtgcggctg ctcaacgtga cgaagctgac caacttccgc agggacggcc
1321 acccgtcggt gtacggcaag gcggcggcgg ggaagaaggt gtcgaggagg aagcaggatt
1381 gcagccactg gtgcctcccc ggcgtgccgg acgcgtggaa cgagctgatc tacgcgtccc
1441 tcgtgttgga acccaagccc agatcatgga aacaccacta gtacactact tcagtttctt
1501 tttgtgtttg tttcggtttg agcagttgag ctgatgcgca aactgaaaat gtgcttgatg
1561 tttgctcaat tgaggacagg aggttttgcc ttgctttttg agatgcaaaa gtcttcctcc
1621 t
//