LOCUS       AK106513                1776 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-107-A08, full insert
            sequence.
ACCESSION   AK106513
VERSION     AK106513.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1776)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1776
                     /clone="002-107-A08"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     CDS             40..534
                     /db_xref="Osa1:LOC_Os01g28970"
                     /db_xref="RAP-DB:Os01g0386500"
                     /note="(RAP Annotation release2) Hypothetical protein"
                     /note="(Rice Genome Annotation Project) expressed protein"
                     /note="mapping to R01-TIGRv4S1-000737R (Chr.1: short
                     arm=16551820, long arm=16553596, direction=reverse) for
                     TIGR Pseudomol ver4"
                     /protein_id="BAG97747.1"
                     /translation="MAGVVYHQPISSSVASLPIPFYHRLCLTPVIPFFLFPLSFSHFH
                     KPPTAPPKPAGAELLLPLFQPSSFPPMLSTDLPGCAASGNTLGRRRRGRSTTEAPAPC
                     PFSSLLLLGRRNRRKERNGRKKRHMTSRPRCTVTFLFYLILIQFQSLDTHIFPTTNPI
                     PMRL"
BASE COUNT          470 a          457 c          244 g          605 t
ORIGIN      
        1 acatcaacat agcctcgagc tcttcctctc tctcctgcca tggccggcgt tgtctaccac
       61 cagccgatct cctcctccgt tgcttccctt cctattccct tttaccatag gctttgcctc
      121 actccggtga ttccattttt cctatttccc ctctccttta gccacttcca caagccacca
      181 acggcaccac caaagccggc cggagctgag ctcttgttgc cgctgttcca gccatcctct
      241 tttcccccta tgctttccac cgacctcccc ggatgcgcag cgagcgggaa cacgcttggc
      301 cgccgccgtc gaggccgttc aaccaccgaa gcaccggcgc cctgtccctt ttcctctctg
      361 ttgttgctcg ggagaagaaa cagaaggaag gagaggaacg ggaggaagaa gagacatatg
      421 acaagtaggc cccgctgcac agtaaccttc ctcttttatt tgattttaat tcaatttcaa
      481 tctttagaca cccatatctt tccaaccaca aatccaatcc caatgagact ttgacctaaa
      541 ttcatataat ttcaaactct tcgttttgat accaaatttc ctatttttaa aattttattt
      601 aaaattcttt atttaaaaac ccttttcctt atttatttat ttactttcta attttaaatt
      661 attttaatta acctttaaaa attattttaa atttatttga tttactttac atccccttta
      721 attttgaatt tcttgtttta tttaaaaacc tttttaaatt ttaattatcc tttaattttt
      781 aaatgcacct tttttttacc attttaaatt ttatttcttt aatctattta aaaccccttt
      841 tgtgtttaaa tttctttgat ttatttaaat actcatttta tttctaaacc attcccaaac
      901 catcccttag ccactaaaaa tccgctgttg gaattttacg ccttctctga agacgttcgc
      961 gtggtctcaa accccgacgt caaaccgttg gctgtaaaac ccggcataac ttaatcccaa
     1021 tgtcgaagtg tcgctcttcg caccccacgc ctcaatgctt acagtggtca gagcctcact
     1081 actccctcga catccacagc acaccagctt tcgagctctg tgtgacccta gccgctctac
     1141 tatcactcac aactgtagag taacactatt ccgtaaacct gtacaaaatt ttcccaactc
     1201 actagtcgtg atggttgacc atagcatcaa ctagatgagc caaatattta gccgttatgc
     1261 tgtccaacct tagcatcggc taaccagttc aaatatctag caatcgtgct gctcaactct
     1321 agcactgact agaaaccaaa tccaccaaac aaaccccacc tatccaaatt atctatttcc
     1381 ccgatttctt ttgttttcaa attaaaattt atttcgaacc attctttttc ctctcgcctt
     1441 gctccaattt tatttattcc ttggttttat cgtttctttg tagcaatttg cttataggct
     1501 ttatttgcca tctttttcat attcgtatgt tagaccgtac agcgagttct atcggcatcc
     1561 aaggagctga cgtggaccca aatggctacg ctgaaaccat gggaaatctt aaggcgcaag
     1621 gcaagacata actaaaattt tgatcatata taaaacttga tataatcttc atatttaaat
     1681 ttgatgcata atatcttact cttttaacat ctgatgggta gatgttaaat gcttttaagc
     1741 atgattacat gatattaata agatacattt gagatc
//