LOCUS AK106513 1776 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:002-107-A08, full insert sequence. ACCESSION AK106513 VERSION AK106513.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1776) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1776 /clone="002-107-A08" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 40..534 /db_xref="Osa1:LOC_Os01g28970" /db_xref="RAP-DB:Os01g0386500" /note="(RAP Annotation release2) Hypothetical protein" /note="(Rice Genome Annotation Project) expressed protein" /note="mapping to R01-TIGRv4S1-000737R (Chr.1: short arm=16551820, long arm=16553596, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG97747.1" /translation="MAGVVYHQPISSSVASLPIPFYHRLCLTPVIPFFLFPLSFSHFH KPPTAPPKPAGAELLLPLFQPSSFPPMLSTDLPGCAASGNTLGRRRRGRSTTEAPAPC PFSSLLLLGRRNRRKERNGRKKRHMTSRPRCTVTFLFYLILIQFQSLDTHIFPTTNPI PMRL" BASE COUNT 470 a 457 c 244 g 605 t ORIGIN 1 acatcaacat agcctcgagc tcttcctctc tctcctgcca tggccggcgt tgtctaccac 61 cagccgatct cctcctccgt tgcttccctt cctattccct tttaccatag gctttgcctc 121 actccggtga ttccattttt cctatttccc ctctccttta gccacttcca caagccacca 181 acggcaccac caaagccggc cggagctgag ctcttgttgc cgctgttcca gccatcctct 241 tttcccccta tgctttccac cgacctcccc ggatgcgcag cgagcgggaa cacgcttggc 301 cgccgccgtc gaggccgttc aaccaccgaa gcaccggcgc cctgtccctt ttcctctctg 361 ttgttgctcg ggagaagaaa cagaaggaag gagaggaacg ggaggaagaa gagacatatg 421 acaagtaggc cccgctgcac agtaaccttc ctcttttatt tgattttaat tcaatttcaa 481 tctttagaca cccatatctt tccaaccaca aatccaatcc caatgagact ttgacctaaa 541 ttcatataat ttcaaactct tcgttttgat accaaatttc ctatttttaa aattttattt 601 aaaattcttt atttaaaaac ccttttcctt atttatttat ttactttcta attttaaatt 661 attttaatta acctttaaaa attattttaa atttatttga tttactttac atccccttta 721 attttgaatt tcttgtttta tttaaaaacc tttttaaatt ttaattatcc tttaattttt 781 aaatgcacct tttttttacc attttaaatt ttatttcttt aatctattta aaaccccttt 841 tgtgtttaaa tttctttgat ttatttaaat actcatttta tttctaaacc attcccaaac 901 catcccttag ccactaaaaa tccgctgttg gaattttacg ccttctctga agacgttcgc 961 gtggtctcaa accccgacgt caaaccgttg gctgtaaaac ccggcataac ttaatcccaa 1021 tgtcgaagtg tcgctcttcg caccccacgc ctcaatgctt acagtggtca gagcctcact 1081 actccctcga catccacagc acaccagctt tcgagctctg tgtgacccta gccgctctac 1141 tatcactcac aactgtagag taacactatt ccgtaaacct gtacaaaatt ttcccaactc 1201 actagtcgtg atggttgacc atagcatcaa ctagatgagc caaatattta gccgttatgc 1261 tgtccaacct tagcatcggc taaccagttc aaatatctag caatcgtgct gctcaactct 1321 agcactgact agaaaccaaa tccaccaaac aaaccccacc tatccaaatt atctatttcc 1381 ccgatttctt ttgttttcaa attaaaattt atttcgaacc attctttttc ctctcgcctt 1441 gctccaattt tatttattcc ttggttttat cgtttctttg tagcaatttg cttataggct 1501 ttatttgcca tctttttcat attcgtatgt tagaccgtac agcgagttct atcggcatcc 1561 aaggagctga cgtggaccca aatggctacg ctgaaaccat gggaaatctt aaggcgcaag 1621 gcaagacata actaaaattt tgatcatata taaaacttga tataatcttc atatttaaat 1681 ttgatgcata atatcttact cttttaacat ctgatgggta gatgttaaat gcttttaagc 1741 atgattacat gatattaata agatacattt gagatc //